BAC Information

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BAC

Clone NameMSMg01-445L21
Chromosome3 (Build37)
Map Location 120,242,806 - 120,243,000
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043278, Ptbp2
Downstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445L21.T7 (MSMg01no445_l21.b1)MSMg01-445L21.TJ (MSMg01no445_l21.g1)
ACCAG534601AG534602
length766851
length of high quality
(start - end)
196 (318 - 513)206 (67 - 272)
definitionCHROMAT_FILE: MSMg01no445_l21.b1 PHD_FILE: MSMg01no445_l21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:03 2005CHROMAT_FILE: MSMg01no445_l21.g1 PHD_FILE: MSMg01no445_l21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCCTATATGTACGNGACTCCGCGGATTCAAGGAA
ATATTACAAAAGATTTGTGTTAGGTTGCACCTCAAGGCAACAGCATTTTT
AACAACCATGATGCACAATGGCCATGTAGTGTCTATCTAGGGTCAAAGAA
GGGAGGACACTGTGCTGGAACCTGCGTGTACCAAAAATAAAGACAAATAA
GTGAAATGTGTAAAACCAAAGTATTCTAGGATTACCCACCCATGTAACAT
GCAGAGCCTACAAGTGGGCATCATCACAAATTGGGGGCAGAAGGTGGACA
TTAAGGCCTTTTGTTTTTGGTCACAAAGAATAGGCCTTTGTTTAGTTTTA
TTATTTTCACCTTTGTGTATATGCATTTGTAAGTATGTTGTGTGAGTGCA
GGTGACTTCTGGGGACCTTCCTGGAGCTGGAGTTATTGGTGGCTGTAAAC
TCCCTGATATGAGTGCTAGGAACCACTTGGGTGTTCTGTAATAGTACACT
GTATGCTAAATTATCAGGCTATCTCATCTTTGCATCCCACACTCATTTTT
TATAAACTGTATTTGTGTGCGTGTTCGTTGTGCGTTCTTTTTTCTTTTAT
CCTTTTACTCTTTTCCACTTTCTAATTTCCACTATTTTCTATTCCTTCTT
TTTTTCCTTTTCTCATTATTTTCTTATCCACTCCACTATTTATATTATAA
ACTCACTCATATTTGTTTTGTCTTTCTCTTGTTTATTTTCCACCTCATTT
TTTCCGACTATCTCTT
TTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTTGATGATTGCTTCGATAATATATTTTAAAAA
TTAAGAACATTGAGAAAAGGTGGAAATTTGATGTGATGTTAACAACAAAC
ATGAGGACTGGTAACAGAGTTCAATAATGATGAGCTTGCCTGGTTTAATC
CTCAGTACTGCAGAAAGAAACAAAGACAGTAACAGTGAAGATGATAGTAT
ATTAAGAGGGAAAAAGAAGGAAGGAGCGAGGTAGGCTATTGCCGTTTTCC
TGTCCCTTTTTTTTTCTTTTCACGCCCCCACACCCGCCCCCTAAAGATCC
GCCTGTTTTTCTCGTCCCTCCTCTACTGTCTCTTCTTTTCCCCATTTTTT
TTTTCTTTTTCGCCACTCCCCTCTTTTTCTTCCAATTTTATCCCTGCTCT
CTCCACTTTAATTTTATTATTTTTTTTCTATTTTTAATATATTATCTTTA
CCTTCTCTATCCCCTTATCTTTACTTCTTTTCAGCTTTTTTTTTTCTCCC
TCCTACATTATCCTTCTTTCTCTTTCCTTATCCCTCCCTCCTTTATATCC
GTAATGTCCCCTTTTCTTTTTTTCTTCTCTCCTCCCCTATCCTCCCTCCA
CTATTTCTTTATTTTCTTTTCTCTCTTCTTTACTCTCCCCTATTTCTTCC
TCCCCTCTTCTCTACCCCATTCTCTCTCCTTTTCCTCTTCTACCTACCTT
TCTCTCACTCCTTCCTATTACTCTCACCCTATTATAATATACCTTTATAC
CTATTATTACTTATGTCTTCCTTCCAGAATATTCTTACCCTTTATTATTT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_l21.g1 MSMg01no445_l21.g1 CHROMAT_FILE:
MSMg01no445_l21.g1 PHD_FILE: MSMg01no445_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:03 2005
         (206 letters)



>mm_chr3_120242599_120243200
          Length = 602

 Score =  317 bits (164), Expect = 3e-91
 Identities = 189/200 (94%), Gaps = 6/200 (3%)
 Strand = Plus / Plus

                                                                       
Query: 8   gattgcttcgataatatattttaaaaattaagaacattgagaaaaggtggaaatttgatg 67
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 208 gattgcttggataatatattttaaaaattaagaacattgagaaaaggtggaaatt----- 262

                                                                       
Query: 68  tgatgttaacaacaaacatgaggactggtaacagagttcaataatgatgagcttgcctgg 127
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 263 tgatgttaacagcaaacatgaggactggtaacagagttcaataatgatgagcttgcctag 322

                                                                       
Query: 128 tttaatcctcagtactgcagaaagaaacaaagacagtaacagtgaagatgatagtatatt 187
           ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 323 tttaatcctcagtactgcagaaagaaacaaagacagtaacaatgaagatgagagtatatt 382

                               
Query: 188 aagagggaaaaagaa-ggaa 206
           ||||||||||||||| ||||
Sbjct: 383 aagagggaaaaagaaaggaa 402


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 602
Length adjustment: 8
Effective length of query: 198
Effective length of database: 594
Effective search space:   117612
Effective search space used:   117612
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)