BAC Information

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BAC

Clone NameMSMg01-446E16
Chromosome3 (Build37)
Map Location 126,039,219 - 126,039,523
singlet/doubletsinglet
Overlap genenone
Upstream geneNdst4, Ugt8a
Downstream geneArsj, Camk2d, Ank2, LOC100043749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446E16.T7 (MSMg01no446_e16.b1)MSMg01-446E16.TJ (MSMg01no446_e16.g1)
ACCAG535022AG535023
length743746
length of high quality
(start - end)
328 (317 - 644)278 (318 - 595)
definitionCHROMAT_FILE: MSMg01no446_e16.b1 PHD_FILE: MSMg01no446_e16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:46 2005CHROMAT_FILE: MSMg01no446_e16.g1 PHD_FILE: MSMg01no446_e16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCTGCATAAT
TTACAGATAAAGTTTATAAATCTTGCATTTGTCTCTTGAAAAGTTAACAA
GATATTTCTAACAGTACTTTGGCAGTTTTTCAACTATTTTATGCATCATG
AAATTGAGTTCATGTGGTTTGCTTAAGGTTTCTTTACTAAATGGGAGTGT
TGAGTTCTTGTTTGCTTAAATGTAACTATTTCTCAACAACATTTATGTTT
TCCAATCACAAGAATCACAGTTACTGTGTTATATCTCTTGTCTTTCCTCA
ACTACATTCCATACTCTTCCACTTTTGTTGGTGTTGAGAAGGAGGAGACT
GAAGATGCACAGCTTGGTTCCATAATGCATCAGAGAAGAGTTTCTAAAGA
TTAAAAAAGTCCATGGAGATACTTTTAATCAAATAGACCACTGGAAACCA
GAAGTCATTATGCTATCAAAACAGAAGAAGAACCTGAAGAGTGAATTTAT
ATGTATTTTTAGGTATTTGGACTCTGTTCAAATTCATCCTTCTTTAGTTT
TCCTTTTTTTTTTACTTGGTGGTATTAATTAAAGTCAGTCAACTATTTAG
GATATATATATATATATATTACATAGATGATTAACGGTAGAAAGATTTAT
TTTATATGATGGATAAATAACAGATAGATAGATAGATAGAAACCTACCTA
CCTACTTACTTACCTACATACCTACATACCTACCTAGATACTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
TCAGGAATTCCTATGTCATGAGAAGACTTCGGAGAAGAAAAGGTCTGGCC
AGATGAAGAGAACAGAGGCACGAAGGAGGGCACTGAAGTCAGAAAGATGA
ATTGCAACAAAGTATAATGACCTTATGTATGAAAATGCCGTAGGCCCCTA
AAGAAGGAGCTAGAGAAAATACCCAAGGAGCTAAAGGTGTTGTGCAACCC
TATAGGAAGATCAACAATATGAACTCACCACTACCCCCCAGAGCTGTGTC
TCTAGTTGTCNATTATCAGAGAATGGCCTAGTCGGCCATCAATGGAAAGA
GAGGACCTTGGTCTTGAGAAGGTCATATGCCCCAGTACAGGGGAATGCCA
GGGCCAGGAACACAGGAGTGGGTAGGTTGGGGGAGCAGGGCAGGGGGAGG
CTATAGGGGACTTTCAGGATAGCATTTTAAATGTAAATGAAGAAAATATC
TAATAAAAAAGAGAAAAAAAGAAAAAGAAAATGCTGTAATGATGCCTGCT
ACTCTGCATGCTAACTTTGAAAAATTAATTGAGAAAACATATTCACACAC
TTAGTAGTTTCCATTTAACATCTCTTAGAGAGCCTCTAATCACATGAAGA
GTGTTTTTCACCTGTCTAGAAAAAAATTATAATACCAGAATTTATAAGGA
GAAACAGAAAGGACCTTCCCGAACTTTATTGTGGCTGATGGATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_e16.b1 MSMg01no446_e16.b1 CHROMAT_FILE:
MSMg01no446_e16.b1 PHD_FILE: MSMg01no446_e16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:46 2005
         (328 letters)



>mm_chr3_126039019_126039748
          Length = 730

 Score =  563 bits (291), Expect = e-165
 Identities = 301/305 (98%), Gaps = 2/305 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccacttttgttggtgttgagaaggaggagactgaagatgcacagcttggttccataat 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 ttccacttttgttggtgttgagaaggaggagacagaagatgcacagcttggttccataat 260

                                                                       
Query: 61  gcatcagagaagagtttctaaagattaaaaaagtccatggagatacttttaatcaaatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatcagagaagagtttctaaagattaaaaaagtccatggagatacttttaatcaaatag 320

                                                                       
Query: 121 accactggaaaccagaagtcattatgctatcaaaacagaagaagaacctgaagagtgaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accactggaaaccagaagtcattatgctatcaaaacagaagaagaacctgaagagtgaat 380

                                                                       
Query: 181 ttatatgtatttttaggtatttggactctgttcaaattcatccttctttagttttccttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatatgtatttttaggtatttggactctgttcaaattcatccttctttagttttccttt 440

                                                                       
Query: 241 --tttttttacttggtggtattaattaaagtcagtcaactatttaggatatatatatata 298
             ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 gttttttttacttggtggtattaattaaagtcagtcaactatttaagatatatatatata 500

                
Query: 299 tatat 303
           |||||
Sbjct: 501 tatat 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 730
Length adjustment: 9
Effective length of query: 319
Effective length of database: 721
Effective search space:   229999
Effective search space used:   229999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)