BAC Information

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BAC

Clone NameMSMg01-446I02
Chromosome3 (Build37)
Map Location 55,702,376 - 55,702,664
singlet/doubletsinglet
Overlap genenone
Upstream gene6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1, Mab21l1, 4933417G07Rik
Downstream geneLOC100040139
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446I02.T7 (MSMg01no446_i02.b1)MSMg01-446I02.TJ (MSMg01no446_i02.g1)
ACCAG535183AG535184
length715720
length of high quality
(start - end)
290 (327 - 616)494 (72 - 565)
definitionCHROMAT_FILE: MSMg01no446_i02.b1 PHD_FILE: MSMg01no446_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:03 2005CHROMAT_FILE: MSMg01no446_i02.g1 PHD_FILE: MSMg01no446_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGATCCGCGGAATTC
TTTTAGCATTGAATATAAAAATGAACAATTTATAGTTGTATTTTTAAACT
ACTTATATTCTAGTTCTCATCAATTTTAAAACTCAAATAAATATAAGTCC
TGAAATTTAAGAAAGTTTAAATATGCTCTAACAGTCATATAAACTCTTTA
TATTTGTATTAAAAATGCAGGTTCTTTTTCTTTCAAGTACTTAGCACTAA
TAATCCATGATAAATATAAATGCCAGGTATCACATTCTTTTCATCAGAAA
GCTTTCATAAACTTACTTATTATTTGCTAAGACAATTTCCAAAAGGAAAC
TACTTGATAATTATTGTGATGAAAGCACAAAGGGAAATGCTTTCAAGTGG
AGGCAGCTCAAGTGGAGGCTGGTCAGGGCTATTCTCAAGAGTCTCATCCT
TGCCCGACAATTACAGACTTGAATTATGGAAGCAATCTGAGAAAATAAGT
CCTTCAACAGCTGCGTGCTCAAGAATTCTAAGTTCTTAGACTGGTCCTAG
GTTGAGTTTCTGTCATAAGTGTAACATTTATAGCAAAACACTAAAGGTGA
GCAATGAGTCATCTGTTTTTATTTAATATTAGCAATGAAATGTGGCCTTG
AAGATTAAGTAATATTTCATAATAAATATTCTCAACGGTGCAGAAATTAT
AAGCTCATATTTTAC
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATCAG
TCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATGTGG
TACATCTACACAATGGAGTACTACTCAGCTATTAACAAGAATGAATTTAT
GAAATTCCTGGCCAAATGGATGGATCTGGAGGGCATCATCCTGAGTGAGG
TAACACATTCACAATGGAATTCACACAATATGTATTCACTGATAAGTGTA
CTTTACCCCCACCTCTTATGAAACCCCCGACATAAGATCTCAGTTCTCTA
AACACTTGATACTTATTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_i02.b1 MSMg01no446_i02.b1 CHROMAT_FILE:
MSMg01no446_i02.b1 PHD_FILE: MSMg01no446_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:03 2005
         (290 letters)



>mm_chr3_55702176_55702864
          Length = 689

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%), Gaps = 1/290 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaagacaatttccaaaaggaaactacttgataattattgtgatgaaagcacaaagggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaagacaatttccaaaaggaaactacttgataattattgtgatgaaagcacaaagggaa 260

                                                                       
Query: 61  atgctttcaagtggaggcagctcaagtggaggctggtcagggctattctcaagagtctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgctttcaagtggaggcagctcaagtggaggctggtcagggctattctcaagagtctca 320

                                                                       
Query: 121 tccttgcccgacaattacagacttgaattatggaagcaatctgagaaaataagtccttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccttgcccgacaattacagacttgaattatggaagcaatctgagaaaataagtccttca 380

                                                                       
Query: 181 acagctgcgtgctcaagaattctaagttcttagactggtcctaggttgagtttctgtcat 240
           |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 381 acagctgcgtgctcaagaattctaagttcttagactcgtcctaggttgagcttctgtcat 440

                                                             
Query: 241 aagtgtaacatttatagcaaaacactaaaggtgagcaatgagtcatctgt 290
           ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 aagtgtaacatttatagcaaa-cactaaaggtgagcaatgagtcatctgt 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 689
Length adjustment: 9
Effective length of query: 281
Effective length of database: 680
Effective search space:   191080
Effective search space used:   191080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)