BAC Information

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BAC

Clone NameMSMg01-446P01
Chromosome3 (Build37)
Map Location 34,147,397 - 34,147,648
singlet/doubletsinglet
Overlap geneEG665636
Upstream geneEG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727
Downstream geneEG622074, Sox2, LOC100041108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446P01.T7 (MSMg01no446_p01.b1)MSMg01-446P01.TJ (MSMg01no446_p01.g1)
ACCAG535515AG535516
length738751
length of high quality
(start - end)
254 (64 - 317)513 (95 - 607)
definitionCHROMAT_FILE: MSMg01no446_p01.b1 PHD_FILE: MSMg01no446_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:36 2005CHROMAT_FILE: MSMg01no446_p01.g1 PHD_FILE: MSMg01no446_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCACAGTCTCCAGGCTACTCAGTATTCACACCCTTTCCTGAGAAGCCTGA
AGTACCAGGAGGTACCTGAAAGACAATACACTTCAAGTTAATGTGTTAAT
GACGCTGAAGCTGGGCCCACAAAAAGTCCCCAGAGTTATACTATCACAGA
ACAAGTCACTGTCTTAAAAGGAGCTCTCGAGTAGAAAAGTCATTATGAAA
AATGAGCATCACCCACCCCTTTGAAAAGTGAGAAACACACAATGTGTTCA
GCTGTGTTTTCATAATCTATATCTGCACTGTGAGAGCAGGGACCAGCCAG
CTTTTCTCCAAATTTCCCTGTTTCTTTGCTCTCCAGGGGAAATTAGTAGA
ATTTGCTCTATATGTTGCTTAGTGGTGAGTTAGCAAGCTTGCTGTCTGAA
CTGGAGCAGCACACTTCCATCCGCGCATCCCCAGTTGATGCGCCATGTTC
ATAGCAAGCCATCAATAAATGTTTGCTGACTTGAAAGACAATGGTGAAGG
CTTTAATTTATCTAACACCAGCCATGGATGGATGATCACTATCTACTTGC
CTTGTGTTGTTGAAAATCGGCATTTAATGATGCCCTGTTTAAACATATTT
CATTTCCCTTTCTTTTAATGGAATCCAATCCCTTCTCTTGGATTGAACAG
CTTTGCCTTTTTCTCTCTGAACTGCCCTCCCTCCATTT
NNCCTCCCCCNNNNNNCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGAT
TAGTTCTAATAACTGTGGCAGAGTTTTTAAAGAGCTTTTAATTTGGAAGA
TCATTTCTAGTTCACAGAGTAGTGATAACTAGACTTTTTTTTTTCAATTT
AGTAATCTTTATTTCTTGCTTAATTTCACTGGCTTGGACTTATGACACCA
TTTTGGATAAAAGTAGGCATTTAGGCATCTTGTTTGATTTCAGATCTTCA
AAGAGAAATCTTATATCTTTTCCCATTCAACAAAATTTTAACTTTTGGCT
TAGTATAAATAACTTTTATTGGGTTAAAATGTATTCCTTGTATACTAAAT
CTGCTCTACATATTTTTATTGTACAGAATTGAATTCTTAGTTTTTTTTCT
GTATCAGTTAAGATAAACATGTGGTTATTTCTGTTGATCTAATCATGTTG
CATTAGTTAGTGCACACTGAACCATCTTTACATTTCTGGGATGAATATCA
CTTGATCACGATGAACAACTTATTATTTATTTATTTGATATAGCATTAGC
TATTGTAACCTCTAGAGATTGCTTAGAGCATATGAGATGATGCCTAAAAA
TCATGTGAAAACCCTCCCATTCATAAAAAGTGACCTGAGTGGCCTTGAAC
TTTGGGTTTCATATGGGCAATGCAACTGCCTCTATGAACTGGCCAAGAGG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_p01.b1 MSMg01no446_p01.b1 CHROMAT_FILE:
MSMg01no446_p01.b1 PHD_FILE: MSMg01no446_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:36 2005
         (254 letters)



>mm_chr3_34147197_34147850
          Length = 654

 Score =  441 bits (228), Expect = e-128
 Identities = 246/252 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctactcagtattcacaccctttcctgagaagcctgaagtaccaggaggtacctgaaaga 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gctacccagtattcacaccctttcctgagaagcctgaagtaccaggaggtacctgaaaga 393

                                                                       
Query: 61  caatacacttcaagttaatgtgttaatgacgctgaagctgggcccacaaaaagtccccag 120
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 392 caatatacttcaagttaatgtgttaatgacgctgaagctgggcccacaaaaagttcccag 333

                                                                       
Query: 121 agttatactatcacagaacaagtcactgtcttaaaaggagctctcgagtagaaaagtcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 agttatactatcacagaacaagtcactgtcttaaaaggagctctcgagtagaaaagtcat 273

                                                                       
Query: 181 tatgaaaaatgagcatcacccacccctttgaaaagtgagaaacacacaatgtgttcagct 240
           || |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tacgaacgatgagcatcacccacccctttgaaaagtgagaaacacacaatgtgttcagct 213

                       
Query: 241 gtgttttcataa 252
           ||||||||||||
Sbjct: 212 gtgttttcataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)