BAC Information

Click to search

BAC

Clone NameMSMg01-446P11
Chromosome3 (Build37)
Map Location 92,735,283 - 92,735,772
singlet/doubletsinglet
Overlap genenone
Upstream genePglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a
Downstream geneLce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446P11.T7 (MSMg01no446_p11.b1)MSMg01-446P11.TJ (MSMg01no446_p11.g1)
ACCAG535535AG535536
length754753
length of high quality
(start - end)		432 (63 - 494)478 (67 - 544)
definitionCHROMAT_FILE: MSMg01no446_p11.b1 PHD_FILE: MSMg01no446_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:38 2005CHROMAT_FILE: MSMg01no446_p11.g1 PHD_FILE: MSMg01no446_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTGA
ACTTTCGCGGGAATTACGTTTTTTCTTATAATCCTTAGTTGAGCACATCC
ATGCTGTAAATACTTAGTGATGTATAAGCCTCTGACGAGCATTTTCATTG
ATGTCTATGCTTAGGAACAGATATTCCTAAATACTTGCATCACCCTAAAG
GAACCTAACTACTGAGGCAGAGTGAGGTATGTATGGTCACATTACCTTGA
AGAGTTATTCATTGTTTCAACTGGGTTGACTTTCTTTTCTTGTTCAGGTT
ATTACAACAGCTTTATTTACTGGGAGAGGTCAGAAACTGATCCCTGATTT
ACCCAGGGGCAGTTATGCCAGACTCACCTTGGGATTTCTAGGATGATGTG
GCTGAGATGGCAGCTAGACCACATATGTGCCACTGGGCAAGGCAACACCC
AGGTCCAAAACTGACTTGTCTGATCATAGCTATGTACGAAGACTAGAATC
TAGATTTGAGTATGATCTCTGGAGTCCTAAATCTCAAGCCCATGTGAATA
TCATGGTTAGTAAACTGTGGACCGACCGATGGTTTCACTTATCCTGTGTG
TCCTGAACTCATCTCTTATGCACTCCCCTAACTACTATATCCACGTTTTT
TTTTCTTTTTTTAACCGCGGGTTATCCCTCCGGTTTCCTCCCTTTCTTTC
ATCACCGTCTTCCTCATCTCGTCTTATTCCTGTTTTCGTACCTCCTTCCT
ATAG

TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATTGGATCATACTTTTGCAACATTCAAATCTACT
GAGAAAAAACAAAAACTTAGACTCAATTCAGTAGATTAAATGAACTTATT
CTTACTCCTTCCAGGTGAACATCATCCTTATAGCCAAAGAACATGTCATG
CTGAAAGAAGCTAAAGGGGGAGGGGCTGTCAAGGTGGACACCAAAGCTGT
ACATTACAATTGTCTCCAGAACACACAGCTGGGCAAGAAAATTGTTTTAC
TCCTTTCAGTTAGTTTTCTTTCCAGTTGTTTATTAATAAAAAGACCACTT
CATCCCAATCCCACAGTGATAAGAAAAATTTACAAAAGCAGAAAGCAAGT
GGTTAAATGCATCAAGCAGGACACCTTTATCCTATTCTTCTTCTTCTTCT
TTTTCTTCTTCTTTTTTTTTTGCCTTTACTATCTCTTAACATTTTTATTA
GATATTTTCTTTATTTACATTTCAAATGTTATCCCCATTCCTAGTTTCCC
CTCCAAAATTCCCATATTTCCTTTCCAACCTTCCCCTCCTTCCCAATTCA
CCAACTCCCACTTTCTTGGGCCGGGCATTTTCCCTATAACTGGGCATAAA
ACTTTTATTGGAACCAGGGGCCTCCCCCCCCCCTTGATTAATTGAATAGG
CCCTCCTCTTGGGATAGCACACGGAACCCCCCCCTATGTTTTCTCCTTGT
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_p11.g1 MSMg01no446_p11.g1 CHROMAT_FILE:
MSMg01no446_p11.g1 PHD_FILE: MSMg01no446_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:38 2005
         (478 letters)



>mm_chr3_92735203_92736082
          Length = 880

 Score =  793 bits (410), Expect = 0.0
 Identities = 466/490 (95%), Gaps = 12/490 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   attggatcatacttttgcaacattcaaatctactgagaaaaaacaaaaacttagactcaa 60
           |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 570 attgaatcatacttttgcaacattcaaatctactgagaaaaaacaaaaatttagactcaa 511

                                                                       
Query: 61  ttcagtagattaaatgaacttattcttactccttccaggtgaacatcatccttatagcca 120
           ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 510 ttcagtagattaaatgaacttattcgtactccttccaggtgaatatcatccttatagcca 451

                                                                       
Query: 121 aagaacatgtcatgctgaaagaagctaaagggg--gaggggctgtcaaggtggacaccaa 178
           ||||| |||||||||||||||||||||||||||  | |||||||||||||||||||||||
Sbjct: 450 aagaatatgtcatgctgaaagaagctaaagggggtggggggctgtcaaggtggacaccaa 391

                                                                       
Query: 179 agctgtacattacaattgtctccagaacacacagctgggcaagaaaattgttttactcct 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 390 agctgtacattacaattgtctccagaacacacagctgggcaagaaaattgttttactccc 331

                                                                       
Query: 239 ttcagttagttttctttccagttgtttattaataaaaagaccacttcatcccaatcccac 298
           |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 330 ttcagttagtttcctttccagttgttttttaataaaaagaccacttcatcccaatcccac 271

                                                                       
Query: 299 agtgataagaaaaatttacaaaagcagaaagcaagtggttaaatgcatcaagcaggacac 358
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 270 agtgataagaaaaatttacaaaagcagaaagcaagtggttaaatgtgtcaagcaggacac 211

                                                                       
Query: 359 ctttatcctattcttcttcttcttct------ttttcttcttctt---ttttttttgcct 409
           ||||||||||||||||||||||||||      |||||||||||||   ||||||||||||
Sbjct: 210 ctttatcctattcttcttcttcttctccttctttttcttcttcttcttttttttttgcct 151

                                                                       
Query: 410 ttactatctcttaacattttt-attagatattttctttatttacatttcaaatgttatcc 468
           |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 150 ttactatctcttaaaattttttattagatattttctttatttacatttcaaatgttatcc 91

                     
Query: 469 ccattcctag 478
           ||||||||||
Sbjct: 90  ccattcctag 81


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 880
Length adjustment: 10
Effective length of query: 468
Effective length of database: 870
Effective search space:   407160
Effective search space used:   407160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |