BAC Information

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BAC

Clone NameMSMg01-447P10
Chromosome3 (Build37)
Map Location 149,963,336 - 149,963,709
singlet/doubletsinglet
Overlap genenone
Upstream geneEG381483, LOC100040620, LOC100040633
Downstream geneLOC100040455, LOC100040463, LOC623554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447P10.T7 (MSMg01no447_p10.b1)MSMg01-447P10.TJ (MSMg01no447_p10.g1)
ACCAG536289AG536290
length894744
length of high quality
(start - end)
185 (43 - 227)384 (82 - 465)
definitionCHROMAT_FILE: MSMg01no447_p10.b1 PHD_FILE: MSMg01no447_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:03 2005CHROMAT_FILE: MSMg01no447_p10.g1 PHD_FILE: MSMg01no447_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGTCCGCGGAA
TTCTCTCCATACCATTAAGAACATAGTTAGGCTGGGCAGTGGTGGCGCAT
GCCTTTAATTCCAGCACTTGAGAGGCAGAGACAGGCGGATTTCTGAGTTC
GAGGCCAGCCTGGTCTACAGAGTGAGTTCAAAACAAAAGAAGAAAGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGAAGAATAACATTACT
AATACGATCATTATTTCTATTTCTTCCTTTTCCTTTCTTCTTTTTCCTTT
TCCTTCTCCCTCACTTCCCTTTTTTTTTTTCTTCTCCCTTTCCCTCTTCT
CCACCTCTCCCCTCCTCTCTCTTCTTCCTTCTCTCCCTACTTCTTTTTTT
TTCTCTATTTTTTTCCCTCTTCTTTCCTTTCCTCCTCTTTTCGCCTTCTT
TTTTTTTTTCTTTCTTTTCTCTCTTTTCTTCTTCCTTTCTCCCCTTCCCT
TTTCCCTCTCCCTTTTTTTCTTCTTCTTTTTTTTTCCTCTTATCCCTCTC
CCCTTCCCCTCTTCTCCTACTCTTTCTTCCTTCCCCCCTCCTTCCTTTCC
TTTCCCCTCTTTCTTTCCCTCTTTTTCTTCCCTCTTCCTTTTCCTTCTAT
CCTCTCTCCCTTTTTTTTTTTTTCCCCTCTTTTTCCTTTTTTCCCCCACC
TTCCTTCCCCTTTTCCCCCTCCTCTCTCTTTTCCTCCTCTCTCTCTTTTC
TCCCTTTTTTCCCCTCTTTCTACTCACACTACCTCCCCCTCTTTCCCTCT
TTCTCCATCCCCTTTTCCTTCTTCTCCCTTTCCCTTCTTCCTCTTTCTTC
TTCCTTCCCTCTTCTTTATATTAACTTCCACTTCTCCTCTCCCN
ATTGTGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTGGATCAGTACTGAGT
TCTAATTTTACTAAGTGATTAGTAAAAATTTATCTTCCATAATTTTCTAT
TCTCTGTTTTTAAAGATTCAAAAGTTGGCAATAATGGAGGGAGCATGATT
GCCTGTTTATTTTAGCTTATCTCTAAGCACAACCATGAATTTCATTCCTG
CCTTCAGCTACCCACAAGGAAAATTTGAAAACATTATAAAGAAATCCAGG
GATCATATTATGCCATTAATTTTCAATTCAGATAATACTACTGTAAGGCA
CAGCAAAGAATGATAGCTTTTGTAATATGCATATATAAACATGTATGCCT
AAAACACACCACACACACACACACACACACACACACACATATTCATCAGA
TAGAAATACTTCATTTAAACAAAAATTATATTATCTTCCTTGTTGAGATA
TCAAATCAAAGAAATCCTTTTTGGGTATGTGTCTAAATGCATGTGTGGTT
CTGGGACATATGCACTCTATAAATATTATGCCATAAGAAAAACTTATATG
GATCTATTACTTTTTGTTCCACTTTACCTTAATTACTTTTTTAATTATTA
TTCGTTTGCTTTGTCTTCCCCCTTTTTTTTCTTCCCCATTTGTCATATCC
TTTCCACTATAACATTCTGTTTTGTTTAATTCACTATTTAGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_p10.g1 MSMg01no447_p10.g1 CHROMAT_FILE:
MSMg01no447_p10.g1 PHD_FILE: MSMg01no447_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:03 2005
         (384 letters)



>mm_chr3_149963188_149963971
          Length = 784

 Score =  681 bits (352), Expect = 0.0
 Identities = 372/384 (96%), Gaps = 10/384 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctggatcagtactgagttctaattttactaagtgattagtaaaaatttatcttccata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 atctggatcagtactgagttctaattttactaagtgattagtaaaaatttatcttccata 463

                                                                       
Query: 61  attttctattctctgtttttaaagattcaaaagttggcaataatggagggagcatgattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 attttctattctctgtttttaaagattcaaaagttggcaataatggagggagcatgattg 403

                                                                       
Query: 121 cctgtttattttagcttatctctaagcacaaccatgaatttcattcctgccttcagctac 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cctgtttattttagtttatctctaagcacaaccatgaatttcattcctgccttcagctac 343

                                                                       
Query: 181 ccacaaggaaaatttgaaaacattataaagaaatccagggatcatattatgccattaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ccacaaggaaaatttgaaaacattataaagaaatccagggatcatattatgccattaatt 283

                                                                       
Query: 241 ttcaattcagataatactactgtaaggcacagcaaagaatgatagcttttgtaatatgca 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 282 ttcaattcagataatactactgtaaggcacagcaaagaatgatagcttttataatatgca 223

                                                                       
Query: 301 tatataaacatgtatgcctaaaacacaccacacacacacacacacacacacacacacata 360
           |||||||||||||||||||||||||||| ||         ||||||||||||||||||||
Sbjct: 222 tatataaacatgtatgcctaaaacacac-ac---------cacacacacacacacacata 173

                                   
Query: 361 ttcatcagatagaaatacttcatt 384
           ||||||||||||||||||||||||
Sbjct: 172 ttcatcagatagaaatacttcatt 149


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)