Query= MSMg01no449_b21.b1 MSMg01no449_b21.b1 CHROMAT_FILE:
MSMg01no449_b21.b1 PHD_FILE: MSMg01no449_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:38 2005
(467 letters)
>mm_chr3_24542552_24543419
Length = 868
Score = 851 bits (440), Expect = 0.0
Identities = 459/471 (97%), Gaps = 10/471 (2%)
Strand = Plus / Plus
Query: 4 ggaattcagtatagcttttaggcaacatagattaactcattaaacttgatgtacttaaga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtatagcttttaggcaacatagattaactcattaaacttgatgtacttaaga 263
Query: 64 tatgaagtacattctcattattttaattctttaactatctccatacctgtgatatatagc 123
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 264 tatgaagtacattctcattattttaattctttaactatctccacacctgtgatatatagc 323
Query: 124 ttagatttactctctgtaatttccctaggtaaacctaattattaatctaatttcttcaga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttagatttactctctgtaatttccctaggtaaacctaattattaatctaatttcttcaga 383
Query: 184 aaaaaatcccacaaaattaatattgtaaaattttgattacttcaaattattttaattgga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaaaatcccacaaaattaatattgtaaaattttgattacttcaaattattttaattgga 443
Query: 244 tttgacaaaaa-taaagcctttataaaaatactccttttgagacatttgaaaaaatgtaa 302
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttgacaaaaaataaagcctttataaaaatactccttttgagacatttgaaaaaatgtaa 503
Query: 303 tattatagaaatgtgatattttatttttaaacacattctatgcatatattaatgtataca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tattatagaaatgtgatattttatttttaaacacattctatgcatatattaatgtataca 563
Query: 363 taagtataatgaatttcctataa---------atatacaaattgttttcaaaaatcattt 413
||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 564 taagtataatgaatttcctataattaaattaaatatacaaattgttttcaaaaatcattt 623
Query: 414 gtaaatcatttatgactaaatagnttttacaatttatttatttgttttact 464
||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 624 gtaaatcatttatgactaaatagtttttacaatttatttatttgttttact 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 868
Length adjustment: 10
Effective length of query: 457
Effective length of database: 858
Effective search space: 392106
Effective search space used: 392106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_b21.g1 MSMg01no449_b21.g1 CHROMAT_FILE:
MSMg01no449_b21.g1 PHD_FILE: MSMg01no449_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:38 2005
(440 letters)
>mm_chr3_24667393_24668232
Length = 840
Score = 714 bits (369), Expect = 0.0
Identities = 369/369 (100%)
Strand = Plus / Minus
Query: 69 gatggcttgaaaataatgtctgaacattttcctgcagaaaaatagacacacattggagtt 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 gatggcttgaaaataatgtctgaacattttcctgcagaaaaatagacacacattggagtt 781
Query: 129 aagaaacattttaccttgacaggcctagtggtatacaccggtgtgtatatcctggaagat 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 aagaaacattttaccttgacaggcctagtggtatacaccggtgtgtatatcctggaagat 721
Query: 189 gagacaggaggatcacagttcaggggctacctgagcgacacagtgagttcatggcaaaaa 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gagacaggaggatcacagttcaggggctacctgagcgacacagtgagttcatggcaaaaa 661
Query: 249 cttagtgagaatttgtctcaaaatgaaatattcattaagagctgggatattattccatgg 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 cttagtgagaatttgtctcaaaatgaaatattcattaagagctgggatattattccatgg 601
Query: 309 tactgtgtttacatagcatgaacaaaatcccagttccaatccacaattccatgataaata 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tactgtgtttacatagcatgaacaaaatcccagttccaatccacaattccatgataaata 541
Query: 369 aataaataaacaaaagaaacatgtatcttgttttaaataatgttttaattacctttacta 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aataaataaacaaaagaaacatgtatcttgttttaaataatgttttaattacctttacta 481
Query: 429 ttttaatac 437
|||||||||
Sbjct: 480 ttttaatac 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
