NNNNNCCCTCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTTAAAAGACATTTTAATCAACTTGTTGTAATTACAT
GAAGTCTTAAGCATTGTAACTCTGTTCATATTAGTCTCTCTTTTCCACTG
TGTATTTAGTTCTTCCCAATCTGAATGAACAATTATCTTTCTCCCACTCA
GGTTTTCCAAGTTGAAAAACAATTAATCAAAAAAATGCATAGAAGTAAAT
CTTGCTAGACTTAGCAGCCTCTCTACCCAAGAGACAGCTCCTACATGAAA
GAATATCAAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAA
AACAAAACAAAACAAAACAAAAAAAGACAAACCACCTGTGTCTGTGTCCA
GAGAAAATTACTTTTACTACATTACTACAATATAACATCTTGGGGTCTGT
CTGCTTCTTACACTATAAATGAATGTAAAGATTATAAAGTCAAATAAATT
CATGTAATGGAGTATTTTAAGCACTAAATTCAACCTTTCGAACTTGANNA
TAACTGAAATAATTAAGTGACTTGAGGATCTGAAAACACAGCAATGATAG
AGCTAGACTTCAGGCCTGCAGCCACTTCGTAAGNCTGGATACTTTCTACC
TTTGAAAACACTGCAAGAATTTCCTTTCCATTAAATTATTTGTGGCAATA
AAAACATTTTTATAATTTAAACACATTTCACCTTGAAAATCTTTTTAAAA
ATCCTAATACTTCCTC

TTAATTANACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGTTGAATCCTTCT
CAACAGTCTGTTTTACGGGAACACTTCATTACCACCGTTCCCCAGCTGAA
GAGTTCTGAATCCACACTGGATCCTTCTCAACAGTCTGTTTTACGGGAAC
ACTTCATTACCATGACCCGCAGTTCTGGTTCCGAAATGAGGGATCTTCCT
TGCGCCGGTGATGGTTAACTCCCGTCCCGAGTTTTCTTGTCCCGGGTTTT
TTCGTCCCGGGTTCTTTCTTCCCAGGTCTTCTCTTTTCGAGTCTTCTCGT
CCCGGGTCTTCTCGTCCCAGGTTTTCTCGTCCCGTGCCCTGTCTCAGCAC
CAACTCTTCCCGAGTTTCGGCACCAACTCTTACCCGCGTTCTCACGACCG
GCCAGGAAGAACGCAACAAACCGGAATCTTCTGCGACAAAGCTTTATTGC
TTACATCTTTAGGAGCCAGAGAGCAAGAGTGCNAGAGAGAGAAAAAGAAC
NAGAGCCAGAAGAACAACCAGAGCAAGAGAGAGAAAAAGCNNGAACCAGA
GAGAGAAAAAGCCCGAACCAGAGAGAGGAAAAGCCCGAACAAGAGAGAGA
AAAACCCCGAACCGGAAAGAAGAAAAGTTTGGTTAAACCCCGGCCCTCTT
AAGGAAAATAACCCCCCGCCCAGGAGGATTAACCCCCGAATG

Query= MSMg01no449_b22.b1 MSMg01no449_b22.b1 CHROMAT_FILE:
MSMg01no449_b22.b1 PHD_FILE: MSMg01no449_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:38 2005
         (481 letters)



>mm_chr3_7350461_7351341
          Length = 881

 Score =  833 bits (431), Expect = 0.0
 Identities = 456/477 (95%), Gaps = 20/477 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttaaaagacattttaatcaacttgttgtaattacatgaagtcttaagcattg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttaaaagacattttaatcaacttgttgtaattacatgaagtcttaagcattg 264

                                                                       
Query: 65  taactctgttcatattagtctctcttttccactgtgtatttagttcttcccaatctgaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taactctgttcatattagtctctcttttccactgtgtatttagttcttcccaatctgaat 324

                                                                       
Query: 125 gaacaattatctttctcccactcaggttttccaagttgaaaaacaattaatcaaaaaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaacaattatctttctcccactcaggttttccaagttgaaaaacaattaatcaaaaaaat 384

                                                                       
Query: 185 gcatagaagtaaatcttgctagacttagcagcctctctacccaagagacagctcctacat 244
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 385 gcatagaagtaaatcttgctagactcagcagcctctctacccaagagacagctcctacat 444

                                                                       
Query: 245 gaaagaatatcaaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 445 gaaagaatatcaaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaa---- 500

                                                                       
Query: 305 acaaaacaaaacaaaaaaagacaaaccacctgtgtctgtgtccagagaaaattactttta 364
                           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ----------------aaagacaaaccacctgtgtctgtgtccagagaaaattactttta 544

                                                                       
Query: 365 ctacattactacaatataacatcttggggtctgtctgcttcttacactataaatgaatgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ctacattactacaatataacatcttggggtctgtctgcttcttacactataaatgaatgt 604

                                                                    
Query: 425 aaagattataaagtcaaataaattcatgtaatggagtattttaagcactaaattcaa 481
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aaagattataaagtcaaataaattcatgtaatggagtattttaagcactaaattcaa 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)