BAC Information

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BAC

Clone NameMSMg01-449F10
Chromosome3 (Build37)
Map Location 130,259,232 - 130,420,193
singlet/doubletdoublet
Overlap geneCol25a1, Agxt2l1, 2310008M10Rik
Upstream geneElovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845
Downstream geneRpl34, LOC546811, LOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449F10.T7 (MSMg01no449_f10.b1)MSMg01-449F10.TJ (MSMg01no449_f10.g1)
ACCAG537336AG537337
length736748
length of high quality
(start - end)		542 (54 - 595)246 (84 - 329)
definitionCHROMAT_FILE: MSMg01no449_f10.b1 PHD_FILE: MSMg01no449_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:56 2005CHROMAT_FILE: MSMg01no449_f10.g1 PHD_FILE: MSMg01no449_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,259,232 - 130,259,755)(130,419,952 - 130,420,193)
sequence
TTTTTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTAATATTACTGTACTTTTTAGAGAATAAATCTGACA
GTTGTTTCTTAAAATGAAAAGATACACACTCCCAGCATCCCTTTCTCATC
TCGAGTTCTGTATGACTGTAAAGCATATCCAGTCTGTATCCATCATAGTC
ATGATTTTACACTGTCTCCCAGCTTAATGATGTATTATTGCTGGGGAAAC
CATATGCTGTATTTATAAAGAGCTTAGAGTCATTTTCAGTTGAAGGCCAT
TTGTTTATCTTCCTAACAAAGTACTCTAGTGGATTAAGGGTCTCTAATAA
AATCAATCAAGTCAGGGCATTAGAGGAAGAGGGAGCTGATAAACATTTAT
TCTCCTCAATCTCTCAACAATGATGGATGATGCTTGTTTCATAATTGTAT
CCTTTAAAGAAACATTTTGTCCAAAACTCTAGAATAACTACATGGATATG
AATGTATTACAGTTACACTATCACATTAGAACTATGAATTTTCACATGGC
TTTGATTAAAAATTGCTATTCTATGAACTAGTTCAGATCATGAAAAANAA
ATTGAGCCTAGTTTAAGTAACTGGGTCCAGTATCCGATGTAGGAGATAAA
ATAGTTGAAGCACTTATGCCTATTATGTTGCCAAAGATATTTGACATTCT
GAATTTGGGATTTACATTTTCCATCCTTTCTTTTGN

TTTTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTCAAAAAAATTCCAGGACAGCCAAGGCTAC
ATAGAGAAACCCTGCCTTGAAAAATTAAACCCTGAAAATTAAACTAAAAA
TATCAGACTCCTGAACCTCTAAAATCTGGGCCCTAAACCTACATTTAAAG
ATATTCTCATCAACCTGGGGCTTGGACCGTCCTTTTATAAAGATGGGGGG
TATGTGTAATTTGACGGAAAAGACTTTCATCATCGTTGGAAGAGTTTGAA
TCATCTCTGTCTGTCTCAGTCATCGTATCTTTATTTACAGAGAAGATAAT
GAGGATCTCGGAGAAATGGTGGTCTCTGCTGTCCGTGTCTCAGTTTGTGT
GGGCAGGAGTTCTCTTTGAATGATTAAAAGAAAGTGACCGGGATGGGAAT
AAGCAAGAAGTCAGCTGATACCATCCAAAATGTTTTTTGTGTCTTTGTGA
GGAATGGTGGATACACACACACACACACACACACACACACATCACACCAG
TTGACGTGCCCAAGCTGTATGTGATTAGCTCTGGGCAGAAGCGCATTAAG
GCATCTGAAAACCACAACTGGGAAAAATCTATTCTGATGCGCCCAAATGT
CCGGCGGATTTCCCTCTCACTGAATTTTTTTGAAAAGCACTTTGATAACA
TGCTACTATTGAAAATATTTTACCGGATTCCTTAAAAAGTTAAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_f10.b1 MSMg01no449_f10.b1 CHROMAT_FILE:
MSMg01no449_f10.b1 PHD_FILE: MSMg01no449_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:56 2005
         (542 letters)



>mm_chr3_130259014_130259955
          Length = 942

 Score =  990 bits (512), Expect = 0.0
 Identities = 521/524 (99%)
 Strand = Plus / Plus

                                                                       
Query: 19  actgtactttttagagaataaatctgacagttgtttcttaaaatgaaaagatacacactc 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 actgtactttttagagaataaatctgacagttgtttcttaaaatgaaaagatacacactc 278

                                                                       
Query: 79  ccagcatccctttctcatctcgagttctgtatgactgtaaagcatatccagtctgtatcc 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 279 ccagcatccctttctcatctcgagttctgtatgactgtaaagcatatccagtctgcatcc 338

                                                                       
Query: 139 atcatagtcatgattttacactgtctcccagcttaatgatgtattattgctggggaaacc 198
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 339 atcatagtcatgattttacactgtctcccagcctaatgatgtattattgctggggaaacc 398

                                                                       
Query: 199 atatgctgtatttataaagagcttagagtcattttcagttgaaggccatttgtttatctt 258
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 atatgctgtgtttataaagagcttagagtcattttcagttgaaggccatttgtttatctt 458

                                                                       
Query: 259 cctaacaaagtactctagtggattaagggtctctaataaaatcaatcaagtcagggcatt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 cctaacaaagtactctagtggattaagggtctctaataaaatcaatcaagtcagggcatt 518

                                                                       
Query: 319 agaggaagagggagctgataaacatttattctcctcaatctctcaacaatgatggatgat 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 agaggaagagggagctgataaacatttattctcctcaatctctcaacaatgatggatgat 578

                                                                       
Query: 379 gcttgtttcataattgtatcctttaaagaaacattttgtccaaaactctagaataactac 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gcttgtttcataattgtatcctttaaagaaacattttgtccaaaactctagaataactac 638

                                                                       
Query: 439 atggatatgaatgtattacagttacactatcacattagaactatgaattttcacatggct 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 atggatatgaatgtattacagttacactatcacattagaactatgaattttcacatggct 698

                                                       
Query: 499 ttgattaaaaattgctattctatgaactagttcagatcatgaaa 542
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ttgattaaaaattgctattctatgaactagttcagatcatgaaa 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no449_f10.g1 MSMg01no449_f10.g1 CHROMAT_FILE:
MSMg01no449_f10.g1 PHD_FILE: MSMg01no449_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:56 2005
         (246 letters)



>mm_chr3_130419703_130420348
          Length = 646

 Score =  429 bits (222), Expect = e-125
 Identities = 237/242 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggacagccaaggctacatagagaaaccctgccttgaaaaattaaaccctgaaaattaaa 60
           |||||||||||||||||||||||||||||||||||||||||  |||   |||||||||||
Sbjct: 491 aggacagccaaggctacatagagaaaccctgccttgaaaaaccaaaaattgaaaattaaa 432

                                                                       
Query: 61  ctaaaaatatcagactcctgaacctctaaaatctgggccctaaacctacatttaaagata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ctaaaaatatcagactcctgaacctctaaaatctgggccctaaacctacatttaaagata 372

                                                                       
Query: 121 ttctcatcaacctggggcttggaccgtccttttataaagatggggggtatgtgtaatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttctcatcaacctggggcttggaccgtccttttataaagatggggggtatgtgtaatttg 312

                                                                       
Query: 181 acggaaaagactttcatcatcgttggaagagtttgaatcatctctgtctgtctcagtcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 acggaaaagactttcatcatcgttggaagagtttgaatcatctctgtctgtctcagtcat 252

             
Query: 241 cg 242
           ||
Sbjct: 251 cg 250


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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