BAC Information

Click to search

BAC

Clone NameMSMg01-449L03
Chromosome3 (Build37)
Map Location 57,500,503 - 57,500,994
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040139, LOC666585, Tm4sf1, LOC383862, Tm4sf4, Wwtr1, Commd2, Gm410
Downstream geneEG623114, Rnf13, LOC675537, Pfn2, EG433594, LOC100040216, 4921539H07Rik, Tsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449L03.T7 (MSMg01no449_l03.b1)MSMg01-449L03.TJ (MSMg01no449_l03.g1)
ACCAG537605AG537606
length761741
length of high quality
(start - end)		496 (49 - 544)---
definitionCHROMAT_FILE: MSMg01no449_l03.b1 PHD_FILE: MSMg01no449_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:23 2005CHROMAT_FILE: MSMg01no449_l03.g1 PHD_FILE: MSMg01no449_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACCCTCCTGATGCCTGGTCCCTTAGCCAGGCAATTGACCTTT
CCGCCTGGATCAGTTCCTAAGGGAGGAGACCACGGCAAGCCTCTACCCAG
AGGCAGAGCCGTTCTTCTGGGTGTGAAGTGCTTGCTAGCTTTTTCTTAAT
GGTCTCCCAGAGCTACTGGAACACACTGAAATCCCCTTCTCAGGTTCTGC
TTCCAGAGGATTCTGGTTAAGTTAGAGATCCTCAGGAAACTTACATGCTT
CACACGAAGCCAAAACCGAGCGATCTGTACCTTCCTGAACTGCGCGTTTA
TTTCACCAGAAAGCGTTTGTCACACTGTTGTTGAGTGGCCTTTTGGAAGC
ATGAGCAAGTCACATAAAGTTAAGGTAGTTGCTCCCTAGCCCACACAGCC
TGCTTGTACTGTGAACTTCATTTCAAAATCATTTGGTTGAACTATAACTA
ATCAGTGAGAATCCTTGCTTTCTGCACCGAAGGTAAATACCAGTTAGCGG
TTGAAACTGTAGCATTCAGATGAGGAACTATGATAGAACTATCTTCTTGC
TCCAATATATTAGCCACGTTCCAGGGAAGTTAGCTGTTGTGGCAAATACG
ATTTTTTTTCCTTAAACCTATTTTAGACTTTTAGTTCCCCCCATTTGACT
CTTCTACCTTTTTTCCTTTTATTGCATGGTCAATACTCTTTTAACTTGGG
TTTTTTTTTCC

NAACGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATATTATAGTTATGTATGGG
CAGACTACATTACNNTTATTAGTAGAAAGTCCCCCNCCCCACAANTCANC
TTAGAATGGAAAGCTTGAGNNTCACTCCCAGTATTCAGCGAATTGTACAA
TGGGGTTTAAGGAGATTGGGATCTGATCGGGCTGTGGTTTAAGGAGGAAC
TAGAGTATTGCATTATTCATGAAAAGGNTAGCTAGAGTTGAACTCTCTAA
TTAGACCTATGCTTTGGAATATGAAAGCCCTTGCCAGGGGAGTGAAAAGA
TTTTTTTTTCTGGTCTTCTAGAAAATGTTGGACCTTTAAAAAAACTTGAC
TTTGGCCCCGGGTGTTTTATTTGGCCAGTTCCTGGGAAGTTTTTTTTGTT
TCCCCTCCCCTTGGTTTTGTGGTGAAAAACTTTTATAATTTCCGGTTTAC
CCACCTGGTGCCCTGGGGGGAGGGGGGTCAATAAATTTTTTCAATATCCT
TTGGGGAATAAAAAACCGGGAGGGCCCGCATTTGGGTTAATTTTATCTTT
TAAATAAAAGGTTTCCTCTCGTTTGGTTGGCGGGTGGTTGTTGTGTATTT
TTTTCTTCCAAATTTTTGTTTCCCCCCTCTGCGTACATAACACTCCTGCT
TCCTCTCCTTTCTTTATTTTTAATATAAGTCCGATTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_l03.b1 MSMg01no449_l03.b1 CHROMAT_FILE:
MSMg01no449_l03.b1 PHD_FILE: MSMg01no449_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:23 2005
         (496 letters)



>mm_chr3_57500299_57501194
          Length = 896

 Score =  928 bits (480), Expect = 0.0
 Identities = 489/492 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccctcctgatgcctggtcccttagccaggcaattgacctttccgcctggatca 64
           |||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccctcctgagggttggtcccttagccaggcaattgacctttccgcctggatca 264

                                                                       
Query: 65  gttcctaagggaggagaccacggcaagcctctacccagaggcagagccgttcttctgggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttcctaagggaggagaccacggcaagcctctacccagaggcagagccgttcttctgggt 324

                                                                       
Query: 125 gtgaagtgcttgctagctttttcttaatggtctcccagagctactggaacacactgaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgaagtgcttgctagctttttcttaatggtctcccagagctactggaacacactgaaat 384

                                                                       
Query: 185 ccccttctcaggttctgcttccagaggattctggttaagttagagatcctcaggaaactt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccccttctcaggttctgcttccagaggattctggttaagttagagatcctcaggaaactt 444

                                                                       
Query: 245 acatgcttcacacgaagccaaaaccgagcgatctgtaccttcctgaactgcgcgtttatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acatgcttcacacgaagccaaaaccgagcgatctgtaccttcctgaactgcgcgtttatt 504

                                                                       
Query: 305 tcaccagaaagcgtttgtcacactgttgttgagtggccttttggaagcatgagcaagtca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcaccagaaagcgtttgtcacactgttgttgagtggccttttggaagcatgagcaagtca 564

                                                                       
Query: 365 cataaagttaaggtagttgctccctagcccacacagcctgcttgtactgtgaacttcatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cataaagttaaggtagttgctccctagcccacacagcctgcttgtactgtgaacttcatt 624

                                                                       
Query: 425 tcaaaatcatttggttgaactataactaatcagtgagaatccttgctttctgcaccgaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcaaaatcatttggttgaactataactaatcagtgagaatccttgctttctgcaccgaag 684

                       
Query: 485 gtaaataccagt 496
           ||||||||||||
Sbjct: 685 gtaaataccagt 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |