Query= MSMg01no449_m23.b1 MSMg01no449_m23.b1 CHROMAT_FILE:
MSMg01no449_m23.b1 PHD_FILE: MSMg01no449_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:32 2005
(438 letters)
>mm_chr3_120921752_120922590
Length = 839
Score = 725 bits (375), Expect = 0.0
Identities = 420/435 (96%), Gaps = 1/435 (0%)
Strand = Plus / Plus
Query: 1 ggctcctctcaacaagtgttaaaggtctcctgcctcccctctctgaagctgggttaccac 60
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggctcctctcagcaagtgttgaaggtctcctgcctcccctctctgaagctgggttaccac 260
Query: 61 tggccactcagctgattgatgaatactgtggtatctatgtcctgtgtgctggagagctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggccactcagctgattgatgaatactgtggtatctatgtcctgtgtgctggagagctgg 320
Query: 121 gtcagaagcccagcttcctcctcaggatgcctgagacatcactctgggaattcccctttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcagaagcccagcttcctcctcaggatgcctgagacatcactctgggaattcccctttc 380
Query: 181 agaaactgcctgccaggtgtgtgaagacagaaccacgctcagaggaaacaaccactcctg 240
|||| ||||||||| |||| ||||||| || ||||||||||||||||||||||||||||
Sbjct: 381 agaagctgcctgcctggtgcatgaagacggagccacgctcagaggaaacaaccactcctg 440
Query: 241 gatgctgtcttactcttctccctgagctccagcagagagcctacagcacctgaaacctaa 300
||||||| ||||| |||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 441 gatgctgccttacacttctccctgagctccaggagacagcctacagcacctgaaacctaa 500
Query: 301 gaatatcctcccccactctgatctctctctctcctctctaacatgctaataatatcctcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaatatcctcccccactctgatctctctctctcctctctaacatgctaataatatcctcc 560
Query: 361 cccaactcttatttctcatccctcccccctccctcttcct-ctccacctgtttctctgtg 419
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 cccaactcttatttctcatccctcccccctccctcttccttctccacctgtttctctgtg 620
Query: 420 cagtgctggctgtcc 434
||| ||||||||||
Sbjct: 621 cagccctggctgtcc 635
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 839
Length adjustment: 9
Effective length of query: 429
Effective length of database: 830
Effective search space: 356070
Effective search space used: 356070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_m23.g1 MSMg01no449_m23.g1 CHROMAT_FILE:
MSMg01no449_m23.g1 PHD_FILE: MSMg01no449_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:32 2005
(409 letters)
>mm_chr3_121046864_121047677
Length = 814
Score = 750 bits (388), Expect = 0.0
Identities = 406/414 (98%), Gaps = 5/414 (1%)
Strand = Plus / Minus
Query: 1 tctgacacactgcacccagtgcagatgaaagcgcttaagtgtgagtgcaagcagcagcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tctgacacactgcacccagtgcagatgaaagcgcttaagtgtgagtgcaagcagcagcat 555
Query: 61 tgggagtgacatttactggctgaaaacagtgaaatcagagcattccagtccacggagatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tgggagtgacatttactggctgaaaacagtgaaatcagagcattccagtccacggagatt 495
Query: 121 aaatgtcagcatctcaatgcttagctgagcattagccatggaagttt---aaaaaaaaaa 177
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 494 aaatgtcagcatctcaatgcttagctgagcattagccatggaagtttaaaaaaaaaaaaa 435
Query: 178 tggaggattcagttttctattgtaaacggcacttcagaaatctaagaagaagactttaaa 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tggaggattcagttttctattgtaaacggcacttcagaaatctaagaagaagactttaaa 375
Query: 238 agcaggaaggagctgatctaggctggagggggacatacagattgttactgaactg--cag 295
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 374 agcaggaaggagctgatctaggctggagggggacatacagattgttactcaactgcacag 315
Query: 296 ttactgaagccagctcagtacccgggctggacagagcctgctgtctttcaccaccacaac 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttactgaagccagctcagtacccgggctggacagagcctgctgtctttcaccaccacaac 255
Query: 356 cagaggacgtgactctccactcacacttagcgagctgtcagtcaaaacccaaaa 409
||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 254 cagaggatgtgactctccactcacacttagcgagctatcagtcaaaacccaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 814
Length adjustment: 9
Effective length of query: 400
Effective length of database: 805
Effective search space: 322000
Effective search space used: 322000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
