BAC Information

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BAC

Clone NameMSMg01-450B11
Chromosome3 (Build37)
Map Location 95,626,751 - 95,626,939
singlet/doubletsinglet
Overlap genenone
Upstream genePogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327
Downstream genePrpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450B11.T7 (MSMg01no450_b11.b1)MSMg01-450B11.TJ (MSMg01no450_b11.g1)
ACCAG537905AG537906
length744836
length of high quality
(start - end)		190 (123 - 312)50 (78 - 127)
definitionCHROMAT_FILE: MSMg01no450_b11.b1 PHD_FILE: MSMg01no450_b11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:53 2005CHROMAT_FILE: MSMg01no450_b11.g1 PHD_FILE: MSMg01no450_b11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATAATTTGCGGCCGNAAAACGAATCACATTCGTACTGGATCCGNNG
GAATCACTATTTCCAAACACTTGGNCTCGACCTCTCAAAGATCTGTCTAC
CTCTGCCTTCTGAGTACTGACATTAAAGGCATATACCACCATGCCTGGCC
AAGCAGTCTGACATTTAGATATCTTGTGTGGAAGTCTGTGTGAGAAAGCT
GTGAATATACTGTGAACCATGGATGGCAGAGTGCAGAATGTTCTTCCTTT
TAGGTGGCCTTCTAGAAAGAATTGCATAAGCTGTGATAAGTGAATGCACT
TGAAAGTCAGTTTTGATGGTTATGCCTGGCATGTCCACAATCTCTGCACA
GGATAGGCAAATCCTGGGAGGAATAGTCTTAACTCTTCACAGGACCAAAG
ATAAGACATACCATCAGGTGTATTCCCTTGCTGTCCTGCATTCATGTAGG
CTAATGGTAAACATCACCTCACTTTAAAAAAAAAATGGGACGTGCTTTGT
TTACACTACTCTTGAGCTCTACAGTCTTGCTCTGAAACCATTACACCACC
ACAAAAATGGAATGCTTAAGACCACTAATGGCAGTGGCAAAGCATTCAGT
AAATCCCATCGTTCATGAAATGTGAGGCGCGTGTTTCCCTTTCTTTCTTT
CTGCTTTACACCCTTCCAAGTCAGGCAAGACTACCTCGTGAGATATTCCT
CCCTTCGTCCGCTTGTTTGACTGTTTCCGATTGCCCCCGTTCCN

CCATGAAGTGGTAGGCTGGGGGCGCCTGTTTCTGACTTGANGTGAACTAT
AGAATTTCCGCGACTGTCCTTTGNAGACAGGCTGGCCTCGAACTCAGAAA
TCTACCTGTCTCTCCTGAGTGCTGGGATTAAAGGCGTGCACCACCACTGC
CCGTTAGGCTCCTGTGTTAACTTCAGGAGTTCAAGGTCATAGCTAGCCAC
TTAGAGAATGAATGCCAGCGTATCTATATGAGAACCTATCTTTTTTTTCT
ATACCCATCCCAAATATATTCCCTTCATTTGAGACTACACCATTGCAAGC
CACCAACTTTTTTTTTTTTCACCACGACACCGGCCCCGCACCCCAAAGCA
CCTTTTCTCCCCCCCCCTTCCCTTTTTGCCGCTCCCTCCCCCTTTTCCTT
CATATCCTCTTTCCCCCATCCTCCCTCCTTTCCTCTTTTTCTCCCACCTT
TTCTTCTCTCTTCTTTTTTCCCTCCACTCCCCCCTCTTTTTTTCCCTTCC
CCTTTTTTCCCCTTTTTCCCCTCCCTCCTCCTTCCCTTATTCCATCCCCT
CCATTACACCTTAATTTTTTTCCCTTTCCTCCCTCCCCACCTTTTCCCCC
CCCACCTTATTTATCATGCACTCCTTATTCTTCAATGCACTCTTCCCTCA
TTTTCCTTCCCCTTGTATACCCCCTTATATTTTACCCCTCCCCCTTCCCC
TTTTTGTAAATTCTCTCCATCTTTTTTTTTTTTTTTTTTCCGGTTGCCAC
CCATTCATGTTTTTTCCCTTTTCCCCTCCCTCTTATTGGCCTTTTCCCCC
TCTGTCTTCTTCCTTTGTCCTCCACCTTCTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_b11.b1 MSMg01no450_b11.b1 CHROMAT_FILE:
MSMg01no450_b11.b1 PHD_FILE: MSMg01no450_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:53 2005
         (190 letters)



>mm_chr3_95626551_95627140
          Length = 590

 Score =  304 bits (157), Expect = 3e-87
 Identities = 181/193 (93%), Gaps = 8/193 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaaaggcatataccaccatgcctggccaagcagtctgacatttagatatcttgtgtgga 60
           |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| 
Sbjct: 389 ttaaaggcatataccaccatgcctgggcaagcagtctgatatttagatatcttgtgtggg 330

                                                                       
Query: 61  agtctgtgtgagaaagctgtgaatatactgtgaaccatggatggcagagtgcagaatgtt 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 329 agtctgtgtgagaaagctgtgaatatactgtgaaccgtggatggcagagtgcagaatgtt 270

                                                                       
Query: 121 cttcc----ttttaggtggccttctagaaagaattgcataagctgtgataagtgaatgca 176
           |||||        |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cttcccacg----aggtggccttctagaaagaattgcataagctgtgataagtgaatgca 214

                        
Query: 177 cttgaaagtcagt 189
           |||||||||||||
Sbjct: 213 cttgaaagtcagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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