BAC Information

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BAC

Clone NameMSMg01-450C04
Chromosome3 (Build37)
Map Location 109,478,548 - 109,583,726
singlet/doubletdoublet
Overlap geneVav3
Upstream geneClcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24
Downstream geneNtng1, LOC100043181, LOC100043183, Prmt6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450C04.T7 (MSMg01no450_c04.b1)MSMg01-450C04.TJ (MSMg01no450_c04.g1)
ACCAG537937AG537938
length731743
length of high quality
(start - end)
245 (75 - 319)459 (75 - 533)
definitionCHROMAT_FILE: MSMg01no450_c04.b1 PHD_FILE: MSMg01no450_c04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:57 2005CHROMAT_FILE: MSMg01no450_c04.g1 PHD_FILE: MSMg01no450_c04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,478,548 - 109,478,792)(109,583,268 - 109,583,726)
sequence
CTTCGCTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTAAGAGGAT
CCGCGGAATTCCCAAGTTACTATCAACTGTCTTAATTTTCAATAATCAGA
AAGACCTTGTGAATGGCTGTAAGTTTCCTTATCAATAACTATATGTTATC
ATGGTGGACCACTGCATACTCAGCAACTGTTCAGTCTTCTAATAATCCTA
GACATGGATTTTCTTTGTTGTGTCTTTGAATTTTGTGTTCACTAAGATTT
GCTCGCTTACCAGATGTCAACATTCAATTAAATGAAACTAATCTGAATTA
TCCCTATTTTTCTAGCAACGAATATTTTATACGTAGAATCAACCAACTGA
ACTAGAGATTTTGGGTTGTTTTCCTTGAGAGTGGTTAAGAAACAGATATT
TGACAATAGGTCTTTGGATATTTCTGGAAATCTATGAAACAATGTCTGTG
TTATAAAATAAAATCAGGGTAAGGATAACAAATTTAAATTAAACATTCAT
TTAATTCTCGGCATGTTTTCTGCTGTCAGGCCATCTGTACACAATCTAGG
CATTAAAAAAAAATCAGACTTCCAGGATAGTTCATCAAACATCTCACTTA
GGAATTCAGAGCTTCACAAAACCCTCTTGGTCACCGCTATGCATCAAGCA
CAGATCATAGTCTTGTTAAATATACTGCCCCAGTGCTAGCTTAACTTTTT
TGCCCTACAAATCAACGCGATACCATGCGCC
GCGATGCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCACCCTACCGCCAGTCTCGCTTGA
ACCAGGGGGAAGCAGGGGGAACAATGTCTTCTGACAAATAACCGAGTCAA
AACTAGATGAAGGAACAGCATGTCTTATTGGTTTTGTTCCCAGAAAAGCC
AATTCAAAGAAGGCAATAAAAGGTAAGCAGGTAATTCCTGCTCTGCCTGC
CACCCCACGTCCAAGACGATTGGATGTTTGTTATTCAAACCAACAGCATC
TTTTGATATAAGAAATATGTATTGATGGAAATAAATTAGCGCCTTGGCTT
AGTGCCAGAGTGGCCAACCAGAAATGGCAGATTTACATTAGAAGCATAAA
TAGAAAATCATATTCCCAGCTCACCAAAGAATGCACATGAAAATTCTGAT
CGCATACAGAGTGTGAGATTACTTCTAATGAGGTGGATTTCTGATATTAA
AATGGAGTTTAAGTCGTCTTATAGTTTATTAGCACAAACCTAAGGCAGAC
TGTGTTATTTCTGGCAATGGTGCACTTTATCATTATCCAGTCACACAGCT
TTGTCACAATTGATCAGGAATCAGACGCTGCACAATTCAATAAGTGGGAT
TCCGACTGCTTATTTCCGAAATCTATTGATTCGCTGATTTAAATCTATTC
ATCCGGCATTTTATCTTTATGAAGGTATAAATAACCATTTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_c04.b1 MSMg01no450_c04.b1 CHROMAT_FILE:
MSMg01no450_c04.b1 PHD_FILE: MSMg01no450_c04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:57 2005
         (245 letters)



>mm_chr3_109478348_109478992
          Length = 645

 Score =  443 bits (229), Expect = e-129
 Identities = 241/245 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactgtcttaattttcaataatcagaaagaccttgtgaatggctgtaagtttccttatca 60
           |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 201 aactgtcttaattttcaataatcagaaaaaccttgtgaatggctgtatgtttccttatca 260

                                                                       
Query: 61  ataactatatgttatcatggtggaccactgcatactcagcaactgttcagtcttctaata 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 ataactatatgttatcatggtggaccactgcatactaagcaactgttcagtcttctaata 320

                                                                       
Query: 121 atcctagacatggattttctttgttgtgtctttgaattttgtgttcactaagatttgctc 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 atcctagacatggattttctttgttatgtctttgaattttgtgttcactaagatttgctc 380

                                                                       
Query: 181 gcttaccagatgtcaacattcaattaaatgaaactaatctgaattatccctatttttcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttaccagatgtcaacattcaattaaatgaaactaatctgaattatccctatttttcta 440

                
Query: 241 gcaac 245
           |||||
Sbjct: 441 gcaac 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no450_c04.g1 MSMg01no450_c04.g1 CHROMAT_FILE:
MSMg01no450_c04.g1 PHD_FILE: MSMg01no450_c04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:57 2005
         (459 letters)



>mm_chr3_109583068_109583926
          Length = 859

 Score =  841 bits (435), Expect = 0.0
 Identities = 453/459 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcaccctaccgccagtctcgcttgaaccagggggaagcagggggaacaatgtcttctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ttcaccctaccgccagtctcgcttgaaccagggggaagcagggggaacaatgtcttctga 600

                                                                       
Query: 61  caaataaccgagtcaaaactagatgaaggaacagcatgtcttattggttttgttcccaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 caaataaccgagtcaaaactagatgaaggaacagcatgtcttattggttttgttcccaga 540

                                                                       
Query: 121 aaagccaattcaaagaaggcaataaaaggtaagcaggtaattcctgctctgcctgccacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 aaagccaattcaaagaaggcaataaaaggtaagcaggtaattcctgctctgcctgccacc 480

                                                                       
Query: 181 ccacgtccaagacgattggatgtttgttattcaaaccaacagcatcttttgatataagaa 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ccacgtccaagtcgattggatgtttgttattcaaaccaacagcatcttttgatataagaa 420

                                                                       
Query: 241 atatgtattgatggaaataaattagcgccttggcttagtgccagagtggccaaccagaaa 300
           ||| | |  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 atagggaaagatggaaataaattagcgccttggcttagtgccagagtggccaaccagaaa 360

                                                                       
Query: 301 tggcagatttacattagaagcataaatagaaaatcatattcccagctcaccaaagaatgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tggcagatttacattagaagcataaatagaaaatcatattcccagctcaccaaagaatgc 300

                                                                       
Query: 361 acatgaaaattctgatcgcatacagagtgtgagattacttctaatgaggtggatttctga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 acatgaaaattctgatcgcatacagagtgtgagattacttctaatgaggtggatttctga 240

                                                  
Query: 421 tattaaaatggagtttaagtcgtcttatagtttattagc 459
           |||||||||||||||||||| ||||||||||||||||||
Sbjct: 239 tattaaaatggagtttaagttgtcttatagtttattagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)