BAC Information

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BAC

Clone NameMSMg01-450D08
Chromosome3 (Build37)
Map Location 154,752,507 - 154,753,104
singlet/doubletsinglet
Overlap geneFpgt
Upstream geneSlc44a5, LOC100040980, Lhx8, LOC100040810, LOC100040829, Tyw3, Cryz, BC007180, Tnni3k
Downstream geneLrrc44, EG383956, Scp2-ps1, EG668902, LOC624519
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450D08.T7 (MSMg01no450_d08.b1)MSMg01-450D08.TJ (MSMg01no450_d08.g1)
ACCAG537993AG537994
length767735
length of high quality
(start - end)
148 (78 - 225)592 (73 - 664)
definitionCHROMAT_FILE: MSMg01no450_d08.b1 PHD_FILE: MSMg01no450_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:03 2005CHROMAT_FILE: MSMg01no450_d08.g1 PHD_FILE: MSMg01no450_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATCTATAATTGCGGGGNTAAAAGAATCACTAATCGTTATCTAGCGNG
GAANNCNCTTACTAGCTGAAAAAGAGGCATTTTGGTCCTCAGTCGTGTGT
TGGAGGATATTTGATCTCTTTGCCACGCCCCAAGATTGTGTTATTTCCTG
GAAAAAATCTGTTTCTTATTGTGGTGTCACTCAGCACTTAATACATACCT
TTGGTTCCCCTGGCTGGAATACAGCCCTTACTACACTCCTTTAATACCAT
ATTATGATGCTAAAGATAGTTTGTAGAAGTAAGTTTTCATGTTTGAAAGT
GGTATCTAATTGAGTGTTTCTCATTTTGATGAATCAGAGAATAATTTGAC
AGAATAAGATATTCCTAACTTTTATGAGAAGAGAGAGGCATATAGGGAGA
GATGCTATGTTTTACCCCTATTCTTTTACCCATTGTTATTTGCCCACCTC
CCACGTTTTCAATCTTCCTGCACATTTCTTCCCCCTATATTCCTATTTCT
CTTCTCTCACCCTTCTTTTTTTTCTACCCTTCTCTCCTCTCCTATTACCT
TTTCCTCTTTACTCCCCCCACTTCCTCTTTCTTTTCAACCCCCTCCCTCC
TTTTTCCTATTTCCTCTTTTTTCCCCCTCCCTCTCTTTTTTTTTCCCCCT
CTTTCTTTCTCTCTTCTTCTCTTTTCTCAATCCACTATTCCTTTCCCTTC
CCTCTTTTTCCTTCTCTTCCCCTTTCCTCTTCTTTTTTCTTTCTCTTCCT
CTTTCTCCTTTTCCTTT
NNAACGATGATGNTGGAGGCCTGGCGGNCGCCTGGTTCACAAATTGAGGT
GAACTATAGAAGTTCCGCAAAATTCTCTGAAGGTCCTGCTAATCCACTCT
GGTAACTTATTGTTGACTTATTCACATTCGCCCTTGAGCTTTCTACCTTT
GACACCGTAGAGACTTTGTCCCCCTTGCAAATGATCTCTCAAATTTAATT
TGTCTTAAAATTCATTGATGGTATTTTACTTGATAAATAAATACTCATTT
TTTCTTTTGTTATGTGCAGTTTGTAAATGGTAGGATTTTCACAAAATTTA
TTTTTAACATAGATTATTATATTTTCTTCTTCTATGAATGTTTTATTTCA
CTTTTGTTTTGCAAATAGAAAATTATTTTTTATAAAACTCATGAAAATGT
GACCATTCCTCAGGCACCTTGAGGGGACTTTTGTTGCCGAGGAAAATGGA
TTATGATGATAATGATAACCCTTTTGTCAAAACTTCTGCCTTGCATTTTT
GTCTGATTTTTAAGAGCAAAAAAGCTACAATGATTAACAGTTTTAAAAAC
AAAAGAAAAGGTGACAAAATATGTAAAAGCAAATAGAACATTTCAAATGA
GAAAAGTCAGAAAAACAGTGTTAGAAGTATAAATTAATACATATAATTAT
ATGAACATTTTGCTTTCATAGAAACTTCTGTTGTTTATATTGCAGTGAGC
TATAAATTTTACCAAGGCTTAACATTAGTCTTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_d08.g1 MSMg01no450_d08.g1 CHROMAT_FILE:
MSMg01no450_d08.g1 PHD_FILE: MSMg01no450_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:03 2005
         (592 letters)



>mm_chr3_154752307_154753306
          Length = 1000

 Score = 1013 bits (524), Expect = 0.0
 Identities = 577/598 (96%), Gaps = 8/598 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctctgaaggtcctgctaatccactctggtaacttattgttgacttattcacattcgcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 798 ttctctgaaggtcctgctaatccactctggtaacttattgttgacttattcacatttgcc 739

                                                                       
Query: 61  cttgagctttctacctttgacaccgtagagactttgtcccccttgcaaatgatctctcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cttgagctttctacctttgacaccgtagagactttgtcccccttgcaaatgatctctcaa 679

                                                                       
Query: 121 a-tttaatttgtcttaaaattcattgatggtattttacttgataaataaatactca-ttt 178
           | |||| |||| |||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 678 attttattttgccttaaaattcattgatggtattttacttgagaaataaatactcatttt 619

                                                                       
Query: 179 tttcttttgttatgtgcagtttgtaaatggtaggattttcacaaaatttatttttaacat 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tttcttttgttatgtgcagtttgtaaatggtaggattttcacaaaatttatttttaacat 559

                                                                       
Query: 239 agattattatattttcttcttctatgaatgttttatttcacttttgttttgcaaatagaa 298
           ||||||||| ||  ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agattattacatcatcaacttctatgaatgttttatttcacttttgttttgcaaatagaa 499

                                                                       
Query: 299 aattattttttataaaactcatgaaaatgtgaccattcctcaggcaccttgaggggactt 358
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 498 aattattttttataaaactcatgaaaatgtgaccatttctcaggcaccttgaggggactt 439

                                                                       
Query: 359 ttgttgccgaggaaaatggattatgatgata------atgataacccttttgtcaaaact 412
           ||||||||||||||||||||| |||||||||      |||||||||||||||||||||||
Sbjct: 438 ttgttgccgaggaaaatggatgatgatgataatgatgatgataacccttttgtcaaaact 379

                                                                       
Query: 413 tctgccttgcatttttgtctgatttttaagagcaaaaaagctacaatgattaacagtttt 472
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 378 tctgccttgcatttttgtctgatttttaagagcaaaaaagctacaataattaacagtttt 319

                                                                       
Query: 473 aaaaacaaaagaaaaggtgacaaaatatgtaaaagcaaatagaacatttcaaatgagaaa 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaaaacaaaagaaaaggtgacaaaatatgtaaaagcaaatagaacatttcaaatgagaaa 259

                                                                     
Query: 533 agtcagaaaaacagtgttagaagtataaattaatacatataattatatgaacattttg 590
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 258 agtcagaaaaacagtgttagaagtataaattaatacatgtaattatatgaacattttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 1000
Length adjustment: 10
Effective length of query: 582
Effective length of database: 990
Effective search space:   576180
Effective search space used:   576180
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)