BAC Information

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BAC

Clone NameMSMg01-451G18
Chromosome3 (Build37)
Map Location 94,911,058 - 94,911,935
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a
Downstream geneVps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451G18.T7 (MSMg01no451_g18.b1)MSMg01-451G18.TJ (MSMg01no451_g18.g1)
ACCAG538914AG538915
length829773
length of high quality
(start - end)		---677 (74 - 750)
definitionCHROMAT_FILE: MSMg01no451_g18.b1 PHD_FILE: MSMg01no451_g18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:40 2005CHROMAT_FILE: MSMg01no451_g18.g1 PHD_FILE: MSMg01no451_g18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTGCAGCTGCCGCGG
AATTCNNNNNTTTTTCCTAAAAAAATGTTTCCGAGACAGGGTTTCTCTTG
TATAGCCCTGGGCTGTGTCCTGTGAACTCACTCCCGAATACCAGGGCTGG
CCGTGCAACCAGAAAATCCTCCTGCACTCTGCCTCCCAAGTGCGGATGAT
TAAACGCGTGCTCGACCTTGGCCGGGTATAATTACATCCTAACTACGGAA
GAATATAAGGAAAACGTCGAAACATGAAAAAATTTAAGCGATAATGAGAC
GAGAACTTGTTATTATTTTTAAACAAATTTTTTTTTTATGTCCTCAAAAC
CAAGTTTTTTATTATCTGCCATATTTATACTATCCACTATCACTTAACCT
CACCACTATAGATTCGCAGCCATAGCACCCCCACCCGTATTTCTCTATAC
CTCCTCAGCCGTATTACACTTTCCTCAGGTGAAAATACCTATGGTTTAAT
TTGTTATTTCGATCTTCTACCCTTCTTCTTCCACACTAACCAAACCACCC
GTTATGACTACTATTTGTCTCCCTCTTTGTATTGCCTCTTTTATATACGT
TTACTACCATAAATTACCAAATCGAGCTAACATATTCTCCATGTATCGCA
CTTCCGTCTCGTACCTTGTAAACCGGTTAAGCTCACCGTTATGTATCCAT
TTAATCTCAATCCTACATTTTATAAAGCGGAATCAATATAATTCTACAGT
GCGATCTCAAATTCGACACCGTATTTTATTACTTTTGAATTCCTTATGGG
GTCGAACTGCCACTAATCCATGACAACAN

ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXGAACGCAGCTCTGTGTCAAGTCCGAAA
TGTTAAGCTCTTGTGCACTACAAAACATCACAACCATCAAGAATTCTTCC
AGCCTTTACTGTTTAAGGTGTCGGCTTGTGGGATCTTCCTTCTAAAGACA
TAAAAATAGATGTTTTGTTTAATTCAAACAGTGCTAGACACAGCGACAGA
GTTCATTAAATGTAAATATTTGATAAATAAGGCAATGAGGATTTGTCAAC
AATATAAGAAGAAAAGTAAGAAAAATACATAAAAACAAAGTTTAAAAGAC
CTGATAAAAAAAGACTACAGACTATCAAATAACCTCCCCCTATCCAAAGT
CCTCCTTAGCATTCAGTTGCTAATTATCTATACTCCAAAGGGCATAGAAA
TACAGAGGGATTCTACTCTAGCCTAGTTGTCATATGAACTCTGCCCAGTT
TTTACAAAGAACCCTAGCAGCTGTGAATATTATGGGAAGCCTAGGGAAGG
CCTTTTTGAACAAGCGCTTCTGAAAAGCAAAGACTGTGTGCTAAAGTTCT
ATGTCCACCTCCTGTCACATTTTTGTACAAGGTAATCACTCAATAATTAT
TTGTGAAATGAATAAATAAAAGGCATGGGAAAAAACCTCCAGCTTATTGG
TTCTAAAGTGGCCTGGACACCTATCCAGATGTTCCTCCAAAGGGAACCCA
GGGCCAGAGCATCCATCAAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_g18.g1 MSMg01no451_g18.g1 CHROMAT_FILE:
MSMg01no451_g18.g1 PHD_FILE: MSMg01no451_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:40 2005
         (677 letters)



>mm_chr3_94910858_94911935
          Length = 1078

 Score =  886 bits (458), Expect = 0.0
 Identities = 671/878 (76%), Gaps = 206/878 (23%)
 Strand = Plus / Plus

                                                                        
Query: 1    gaacgcagctctgtgtcaagtccgaaatgttaagctcttgtgcactacaaaacatcacaa 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201  gaacgcagctctgtgtcaagtccgaaatgttaagctcttgtgcactacaaaacatcacaa 260

                                                                        
Query: 61   ccatcaagaattcttccagcctttactgtttaaggtgtcggcttgtgggatcttccttct 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261  ccatcaagaattcttccagcctttactgtttaaggtgtcggcttgtgggatcttccttct 320

                                                                        
Query: 121  aaagacataaaaatagatgttttgtttaattcaaacagtgctagacacagcgacagagtt 180
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321  aaagacataaaaatagatgttttgtttacttcaaacagtgctagacacagcgacagagtt 380

                                                                        
Query: 181  cattaaatgtaaatatttgataaataaggcaatgaggatttgtcaacaatataagaagaa 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381  cattaaatgtaaatatttgataaataaggcaatgaggatttgtcaacaatataagaagaa 440

                                                                        
Query: 241  aagtaagaaaaatacataaaaacaaagtttaaaagacctgataaaaaaa-gactacagac 299
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441  aagtaagaaaaatacataaaaacaaagtttaaaagacctgataaaaaaaagactacagac 500

                                                                        
Query: 300  tatcaaataacctccccctatccaaagtcctccttagcattcagttgctaattatctata 359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501  tatcaaataacctccccctatccaaagtcctccttagcattcagttgctaattatctata 560

                                                                        
Query: 360  ctccaaagggcatagaaatacagagggattctactctagcctagttgtcatatgaactct 419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561  ctccaaagggcatagaaatacagagggattctactctagcctagttgtcatatgaactct 620

                                                                        
Query: 420  gcccagttttt------------------------------------------------- 430
            |||||||||||                                                 
Sbjct: 621  gcccagttttttttttttttttttaaagatttatttattgattatatgtaagtacactgt 680

                                                                        
Query: 430  ------------------------------------------------------------ 430
                                                                        
Sbjct: 681  agctgtcttcagacactccagaagagggcatcagatttcattagggatggttgtgagcca 740

                                                                        
Query: 430  ------------------------------------------------------------ 430
                                                                        
Sbjct: 741  ccatgtggttgctgggatttgaactctggatcttcggaagagcagtcgggtgctcttacc 800

                                                                        
Query: 431  ------------------------------------acaaagaaccctagcagctgtgaa 454
                                                ||||||||||||||||||||||||
Sbjct: 801  cactgagccatctcaccagccctctgcccagtttttacaaagaaccctagcagctgtgaa 860

                                                                        
Query: 455  tattatgggaagcctagggaaggcctttttgaacaagcgcttctgaaaagcaaagactgt 514
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861  tattatgggaagcctagggaaggcctttttgaacaagcgcttctgaaaagcaaagactgt 920

                                                                        
Query: 515  gtgctaaagttctatgtccacctcctgtcacatttttgtacaaggtaatcactcaataat 574
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921  gtgctaaagttctatgtccacctcctgtcacatttttgtacaaggtaatcactcaataat 980

                                                                        
Query: 575  tatttgtgaaatgaataaataaaaggcatgggaaaaaacctccagcttattggttctaaa 634
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981  tatttgtgaaatgaataaataaaaggcatgggaaaaaacctccagcttattggttctaaa 1040

                                                  
Query: 635  gtggcctggacacctatccagatgttcctccaaaggga 672
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 gtggcctggacacctatccagatgttcctccaaaggga 1078


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1078
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1068
Effective search space:   712356
Effective search space used:   712356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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