Query= MSMg01no451_i21.b1 MSMg01no451_i21.b1 CHROMAT_FILE:
MSMg01no451_i21.b1 PHD_FILE: MSMg01no451_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:51 2005
(667 letters)
>mm_chr3_66175969_66177034
Length = 1066
Score = 1195 bits (618), Expect = 0.0
Identities = 652/664 (98%), Gaps = 3/664 (0%)
Strand = Plus / Minus
Query: 5 gaattctatcccttac-catatgctaattacctaagagactttggaaaaaaagaattttc 63
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gaattctataccttacaaatatgctaattacctaagagactttggaaaaaaagaattttc 698
Query: 64 ctagtaaattactttaggtacaaaaacaaaataatagcattaactgtatttagaaatgaa 123
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ctaataaattactttaggtacaaaaacaaaataatagcattaactgtatttagaaatgaa 638
Query: 124 aaagaaaattaagaacatgttgattactgattgacactcagcaaaaaataaaaaagttga 183
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 637 aaagaaaattaagaacatgttgattactgattgacactcagcaaaaaatacaaaagttga 578
Query: 184 gaaatgggactcccaaacttgtcattgaccaaggcagagtgtgcacatagcagacactcc 243
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 577 gaaatgggactcccaaacttgtcattggccaaggcagagtgtgcacatagcagacactcc 518
Query: 244 tatgatgcttggaccagtaaaaccacactgccaccagaatctgcaggagtgagctccctc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tatgatgcttggaccagtaaaaccacactgccaccagaatctgcaggagtgagctccctc 458
Query: 304 tggtagatcttctttggaactgacaggagaaataaagatgatattcatcttttcttgttt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tggtagatcttctttggaactgacaggagaaataaagatgatattcatcttttcttgttt 398
Query: 364 ttactacatagtacagaactgatctagacatcaaatgtaccatatttcccggcacaatat 423
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ttact--atagtacagaactgatctagacatcaaatgtaccatatttcccggcacaatat 340
Query: 424 ggtacatcttttcattttcctggtcctggacctgaacctcaagacttgtacttttaggaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ggtacatcttttcattttcctggtcctggacctgaacctcaagacttgtacttttaggaa 280
Query: 484 aaggttctgccattgagataattccctgagtccagtaaattatatttctctttctactcc 543
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 279 aaggttctgccattgagataattccctgattccagtaaattatatttctctttctactcc 220
Query: 544 tcgtccctctcctccttttgttttgcaacagtgttccactcagccaaggctgaccttaat 603
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 219 tcgttcctctcctccttttgttttgaaacagtgttccactcagccaaggctgaccttaaa 160
Query: 604 ctctacatagttgttaaggatcttgaatttctggccctcctgcctctacctccagggtac 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ctctacatagttgttaaggatcttgaatttctggccctcctgcctctacctccagggtac 100
Query: 664 tagg 667
||||
Sbjct: 99 tagg 96
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1066
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1056
Effective search space: 693792
Effective search space used: 693792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_i21.g1 MSMg01no451_i21.g1 CHROMAT_FILE:
MSMg01no451_i21.g1 PHD_FILE: MSMg01no451_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:51 2005
(625 letters)
>mm_chr3_65987858_65988882
Length = 1025
Score = 839 bits (434), Expect = 0.0
Identities = 446/450 (99%)
Strand = Plus / Plus
Query: 1 actatgtagatcaggctggctttgaactcacagagatctaagtacctctccagtcaagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatgtagatcaggctggctttgaactcacagagatctaagtacctctccagtcaagtg 260
Query: 61 ttgagattgaaggggtggggcaagaaacagtttattttgactcagttttagaacgttttg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 ttgagattgaaggggtggggcaagaaacagtttattttgactcagttttagaactttttg 320
Query: 121 ttcatctaaaaaaggaaaagcatgatggaattcattcaagggaacatgcatctagggaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcatctaaaaaaggaaaagcatgatggaattcattcaagggaacatgcatctagggaca 380
Query: 181 ttcaaagtacagttgcagacagaagcgaaaaacacaggtcagctccatgatcaggcacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcaaagtacagttgcagacagaagcgaaaaacacaggtcagctccatgatcaggcacaa 440
Query: 241 gtctcaaaggactaccctactgccaccagcctactccgtgtctcctaaagctctgctatt 300
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 441 gtctcaaaggactaccctactgccaccagcctactccctgtctcctaaagctctgccatt 500
Query: 301 ttcaaaatagtaatgccagctggatcaagcatggagaacctgaggccatagaggatattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcaaaatagtaatgccagctggatcaagcatggagaacctgaggccatagaggatattt 560
Query: 361 cagatccacaaaccataattttcacgtggggaagtagagtctgtagagggaaaagtactt 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 cagatccacaaaccataattttcacgtggggaagtagagtctgtagggggaaaagtactt 620
Query: 421 cagctcagaggattttaaaaagatatattt 450
||||||||||||||||||||||||||||||
Sbjct: 621 cagctcagaggattttaaaaagatatattt 650
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
