BAC Information

Click to search

BAC

Clone NameMSMg01-451K04
Chromosome3 (Build37)
Map Location 39,818,246 - 39,964,020
singlet/doubletdoublet
Overlap genenone
Upstream geneFat4, LOC100041432, LOC100040853, LOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451K04.T7 (MSMg01no451_k04.b1)MSMg01-451K04.TJ (MSMg01no451_k04.g1)
ACCAG539078AG539079
length728729
length of high quality
(start - end)
431 (73 - 503)497 (81 - 577)
definitionCHROMAT_FILE: MSMg01no451_k04.b1 PHD_FILE: MSMg01no451_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:57 2005CHROMAT_FILE: MSMg01no451_k04.g1 PHD_FILE: MSMg01no451_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,818,246 - 39,818,674)(39,963,676 - 39,964,020)
sequence
TGCTGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATCAATTCTTGAAACAACTGTAGCTAATGGGATATTGGT
GCACAGTAATGTAGAGGTGTGAGCATAGGGTGAGGTCAAATTGGGCTATC
CACGCCCTCACTCCCCAGGGGTTCTAGACAGAAAGTATGCTTCCAGAGTA
CACATCAGTCTTAGCTTTGGTGCCTTTCTGAGACCGTGGGGGATATTTCC
AAGTCTCCCCACACAGTGAGAGTCATAGAGCTATTAGAGCTTCTACTAAC
ATCACCACCTGTGCAGCAACTGAATGCAAACCCCTTGAAGGCAAAGAAAT
TATTTTGTAAAGGAATATGGAATGAAAAAATACTTTGGTGCAGAATTCAC
TTTCTGTGCTCCCTAATCACTCTGAACCTTTTGATCTGTGTCAGCCTATT
TCATTTGATGCTTCCTGCTGAGCATTTTAAATGCAGAGCAAGCTATTTGA
ATAACGAACGAGGCTCAGAGTACAAGTCCACAAGTAATAGAATAATTTAC
CTGTACTCATCAAGTCTCTGGAGCAAGTTCTAACTCAAATGCTCTAAAGC
CTGAGGCTTACCAAATGAAGACCCCAGGCTACAATGTACCACTTGGTAAG
GCGGTCGGACGCGCACGCACTTGCGTGTGCTTGCATGCGTCTCGTGCGTG
CATGCCGCGCGTGCTTGAACGGTGTTTG
CTTCCCCGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCACATGAATGAGAGTGAG
AGAGCTCTCACCACAAGAACTGCCTTAAAATATTCTGAAGGGCCTTATAC
TGTAATGCTATGATCCTGATGTGCAAACCCTTCCCAACTTTAGCAGGAAG
GCTACTAAGTAAGTTGAGAAAATAGGACAGCACTGCACATGATCATTAAG
GTGATTTTAAAAGTATCCTGGGGTTGGTGAGATGTGGGTAGAGGCCTGAG
GATGTCTCAAGGTATCAGGAGAGAACTCACACTGAGAGTTGTCCTCTGAC
AGGCCATGGCTTGTGTGTACCTGTACTCACACATATGTGAACCCAGATAC
ACACACATTAGAAATGTGAAAGTAGGGGCTGGTGAGATGGCTCAGTGGGT
AAGAGCACCCGACTGCTCTTCCAAAGGTTGGAAGTTCAAATCCCAGCAAC
CACATGGTGGCTCACAACCATCCATAACAAGATCTGACTCCCTCTTCTGG
AGTGTCTGAGGACATAAATAAATAAATAAATAAATAAATAAATAAATCTT
TAAAAAAAAAGAAATGTGAAAGTAATCTGATCTCTTCAATTTGGAACAGT
TAGTTTTTAATAGCAAAATGAGAGTTCACACTGTGAAATCAAATTGTAGA
CTGGCTGGATTAATCATAGCTTTCTTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_k04.b1 MSMg01no451_k04.b1 CHROMAT_FILE:
MSMg01no451_k04.b1 PHD_FILE: MSMg01no451_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:57 2005
         (431 letters)



>mm_chr3_39818046_39818876
          Length = 831

 Score =  783 bits (405), Expect = 0.0
 Identities = 423/429 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacaactgtagctaatgggatattggtgcacagtaatgtagaggtgtgagcatagggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacaactgtagctaatgggatattggtgcacagtaatgtagaggtgtgagcatagggtg 260

                                                                       
Query: 61  aggtcaaattgggctatccacgccctcactccccaggggttctagacagaaagtatgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtcaaattgggctatccacgccctcactccccaggggttctagacagaaagtatgctt 320

                                                                       
Query: 121 ccagagtacacatcagtcttagctttggtgcctttctgagaccgtgggggatatttccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagagtacacatcagtcttagctttggtgcctttctgagaccgtgggggatatttccaa 380

                                                                       
Query: 181 gtctccccacacagtgagagtcatagagctattagagcttctactaacatcaccacctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctccccacacagtgagagtcatagagctattagagcttctactaacatcaccacctgt 440

                                                                       
Query: 241 gcagcaactgaatgcaaaccccttgaaggcaaagaaattattttgtaaaggaatatggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcagcaactgaatgcaaaccccttgaaggcaaagaaattattttgtaaaggaatatggaa 500

                                                                       
Query: 301 tgaaaaaatactttggtgcagaattcactttctgtgctccctaatcactctgaacctttt 360
           |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 501 tgaaaaaatactttggtgcagaattcacgttctgtgcttcctaatcactctgaacctttt 560

                                                                       
Query: 361 gatctgtgtcagcctatttcatttgatgcttcctgctgagcattttaaatgcagagcaag 420
           ||| ||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 561 gatgtgtgtcaacctatttcatttgatgcttcctgctgagcattctaaatgcaaagcaag 620

                    
Query: 421 ctatttgaa 429
           |||||||||
Sbjct: 621 ctatttgaa 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no451_k04.g1 MSMg01no451_k04.g1 CHROMAT_FILE:
MSMg01no451_k04.g1 PHD_FILE: MSMg01no451_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:57 2005
         (497 letters)



>mm_chr3_39963477_39964373
          Length = 897

 Score =  590 bits (305), Expect = e-173
 Identities = 335/345 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccacatgaatgagagtgagagagctctcaccacaagaactgccttaaaatattctgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cccacatgaatgagagtgagagagctctcaccacaagaactgccttaaaatattctgaag 485

                                                                       
Query: 61  ggccttatactgtaatgctatgatcctgatgtgcaaacccttcccaactttagcaggaag 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ggccttatactgtaatgccatgatcctgatgtgcaaacccttcccaactttagcaggaag 425

                                                                       
Query: 121 gctactaagtaagttgagaaaataggacagcactgcacatgatcattaaggtgattttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gctactaagtaagttgagaaaataggacagcactgcacatgatcattaaggtgattttaa 365

                                                                       
Query: 181 aagtatcctggggttggtgagatgtgggtagaggcctgaggatgtctcaaggtatcagga 240
           |||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 364 aagtatcccggggttggtgagatgtgggtagaggcctgagtatgcctcaaggtatcagga 305

                                                                       
Query: 241 gagaactcacactgagagttgtcctctgacaggccatggcttgtgtgtacctgtactcac 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 304 gagaacccacactgagagttgtcctctgacaggccatggcttgtgtgtacctgtactcat 245

                                                        
Query: 301 acatatgtgaacccagatacacacacattagaaatgtgaaagtag 345
           |||||||||||| |||||||||||||| ||||| ||| |||||||
Sbjct: 244 acatatgtgaactcagatacacacacactagaagtgttaaagtag 200


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)