BAC Information

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BAC

Clone NameMSMg01-452P12
Chromosome3 (Build37)
Map Location 125,076,199 - 125,224,757
singlet/doubletdoublet
Overlap geneNdst4
Upstream geneLOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817, LOC668820
Downstream geneUgt8a, Arsj
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452P12.T7 (MSMg01no452_p12.b1)MSMg01-452P12.TJ (MSMg01no452_p12.g1)
ACCAG540095AG540096
length747748
length of high quality
(start - end)		679 (69 - 747)671 (78 - 748)
definitionCHROMAT_FILE: MSMg01no452_p12.b1 PHD_FILE: MSMg01no452_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:41 2005CHROMAT_FILE: MSMg01no452_p12.g1 PHD_FILE: MSMg01no452_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,224,079 - 125,224,757)(125,076,199 - 125,076,868)
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCANAGATATCTTCCAGGGTAAGTGCTACAATTCAGCTTTCAGT
TTCATTGCTCCTAAGCACATCATCAAAATGACATTGCTGATTGGGGTGGG
TAGTCTGACTGCTGTTTCACCACCAGAGAGCTTCCTTTTTTTGATTTACC
TACAAACTTTGATAATGTCTCAGTATTGCGTTCTTTTACTTAGAAAAATA
GCCCATATTACCTTTGCTCTTTGGTTAAGTGGCCCTGCTTGGCCAAGAAA
TATCTCCTAGGTTTTTCATATCAATATGTCCTAACCTTCTTTAAGGAGGT
TTGGCTCATTTACAAACTCCAAAGCAAGGTATTGTTTGCTTGATGCTATA
ACGTGAGTCAAAAATTTTGAGATAAATTGATAATATAACTTATTTGCTAC
CATAACATAAAACACTTGGGAAAATAAACTTTTATCTTGTTCATTGTTAG
GTCACCAGTACTGAGACTCATTTCTGGTACATACCAATTGTATAATGTCT
TTCTTTTATTCAGTAGGTAGATAAGTATACTATTTTGAATTATGTCTTAT
AAAAATATTTAAATATTTGATCATTTTCTTACATGAAGCAATTGAGAAAG
CCATATACTGTGTCTCCTAACAATAGATAACAAAGGACTTACATGAAAAT
AACAGGCTTAATAACATGATATATATGTTAGTGCACCATATGATTAT

NAACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAGACTAATAAAGAGTAAAGG
AAGATTGTAACTGCTGACACGTACGCGGAAAGAATTAATGCTTCTCAGAT
TGAAGGTGGGTTATTCCTGATGTTTTCTAGACATTCTGTTACTAAGTTAT
GACCTAGTTATTTGTTTTAATTTTTTTTGTTTGTTTATTTGTTTCTATTG
GTTTTAATTTTAAAATTCCACCCTGATAAGCTACCAAGGCTGGGCTTAAA
TTTACTCTGCAATTCAAGAATGCCTTGAATTTGTCGATGCTCTCCAGGTA
AACCCAGCACCTGGGATTATAATCACAATGAGTCCTTGCTTTAGTCACAG
ATGTCAACTAGCCTCTTTGCACCAGCATTTATGTGTCGATATATGCTTCG
GAAATATACATTTTACTGTGTTTCTTTTATTTTAAAATCTCCTTCAATAC
TCTTCAGAGTTGTACTTTATAACTAATACATTAAAATTATTCACTCCTTT
ACTGAATTGGTCTTCGTGTAAAGTTTCATTAGTAAATGCCCAGTTGTGTG
AACTACTGTCTGTGTGGATGACGCAACCTATTCTGTTAGTTTACAACAAA
AGGCTCAAAATATCAAGCCACAGATTTTGATCTTTTGTAGATTATCTTAT
TCAACTTTAACAAAATACAGGGATTCAAGGAGAACTTACTTTAATTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_p12.b1 MSMg01no452_p12.b1 CHROMAT_FILE:
MSMg01no452_p12.b1 PHD_FILE: MSMg01no452_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:41 2005
         (679 letters)



>mm_chr3_125224030_125225108
          Length = 1079

 Score = 1259 bits (651), Expect = 0.0
 Identities = 672/679 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccagggtaagtgctacaattcagctttcagtttcattgctcctaagcacatcatcaaaa 60
           |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 728 tccagggtaagtgcaacaattcagctttcagcttcattgctcctaagcacatcatcaaaa 669

                                                                       
Query: 61  tgacattgctgattggggtgggtagtctgactgctgtttcaccaccagagagcttccttt 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tgacattgctgatgggggtgggtagtctgactgctgtttcaccaccagagagcttccttt 609

                                                                       
Query: 121 ttttgatttacctacaaactttgataatgtctcagtattgcgttcttttacttagaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ttttgatttacctacaaactttgataatgtctcagtattgcgttcttttacttagaaaaa 549

                                                                       
Query: 181 tagcccatattacctttgctctttggttaagtggccctgcttggccaagaaatatctcct 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tagcccatattacctttgttctttggttaagtggccctgcttggccaagaaatatctcct 489

                                                                       
Query: 241 aggtttttcatatcaatatgtcctaaccttctttaaggaggtttggctcatttacaaact 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 488 aggtttttcatatcaatatgtccaaaccttctttaaggaggtttggctcatttacaaact 429

                                                                       
Query: 301 ccaaagcaaggtattgtttgcttgatgctataacgtgagtcaaaaattttgagataaatt 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 428 ccaaagcaaggtattgtttgcttgatgctataacatgagtcaaaaattttgagataaatt 369

                                                                       
Query: 361 gataatataacttatttgctaccataacataaaacacttgggaaaataaacttttatctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gataatataacttatttgctaccataacataaaacacttgggaaaataaacttttatctt 309

                                                                       
Query: 421 gttcattgttaggtcaccagtactgagactcatttctggtacataccaattgtataatgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gttcattgttaggtcaccagtactgagactcatttctggtacataccaattgtataatgt 249

                                                                       
Query: 481 ctttcttttattcagtaggtagataagtatactattttgaattatgtcttataaaaatat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ctttcttttattcagtaggtagataagtatactattttgaattatgtcttataaaaatat 189

                                                                       
Query: 541 ttaaatatttgatcattttcttacatgaagcaattgagaaagccatatactgtgtctcct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttaaatatttgatcattttcttacatgaagcaattgagaaagccatatactgtgtctcct 129

                                                                       
Query: 601 aacaatagataacaaaggacttacatgaaaataacaggcttaataacatgatatatatgt 660
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 aacaatagataacaaatgacttacatgaaaataacaggcttaataacatgatatatatgt 69

                              
Query: 661 tagtgcaccatatgattat 679
           |||||||||||||||||||
Sbjct: 68  tagtgcaccatatgattat 50


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no452_p12.g1 MSMg01no452_p12.g1 CHROMAT_FILE:
MSMg01no452_p12.g1 PHD_FILE: MSMg01no452_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:41 2005
         (671 letters)



>mm_chr3_125075999_125077069
          Length = 1071

 Score = 1234 bits (638), Expect = 0.0
 Identities = 662/670 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttagactaataaagagtaaaggaagattgtaactgctgacacgtacgcggaaagaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttagactaataaagagtaaaggaagattgtaactgctgacacgtacgcggaaagaatta 260

                                                                       
Query: 61  atgcttctcagattgaaggtgggttattcctgatgttttctagacattctgttactaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcttctcagattgaaggtgggttattcctgatgttttctagacattctgttactaagt 320

                                                                       
Query: 121 tatgacctagttatttgttttaattttttttgtttgtttatttgtttctattggttttaa 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgtcctagttatttgttttaattttttttgtttgtttatttgtttctattggttttaa 380

                                                                       
Query: 181 ttttaaaattccaccctgataagctaccaaggctgggcttaaatttactctgcaattcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttaaaattccaccctgataagctaccaaggctgggcttaaatttactctgcaattcaa 440

                                                                       
Query: 241 gaatgccttgaatttgtcgatgctctccaggtaaacccagcacctgggattataatcaca 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaggccttgaatttgtcgatgctctccaggtaaacccagcacctgggattataatcaca 500

                                                                       
Query: 301 atgagtccttgctttagtcacagatgtcaactagcctctttgcaccagcatttatgtgtc 360
           |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 501 atgagtccttgctttagtcacagatgtcaactagtctctttgcactagcatttatgtgtc 560

                                                                       
Query: 361 gatatatgcttcggaaatatacattttactgtgtttcttttattttaaaatctccttcaa 420
           |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatatatgcttcagaaatataaattttactgtgtttcttttattttaaaatctccttcaa 620

                                                                       
Query: 421 tactcttcagagttgtactttataactaatacattaaaattattcactcctttactgaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tactcttcagagttgtactttataactaatacattaaaattattcactcctttactgaat 680

                                                                       
Query: 481 tggtcttcgtgtaaagtttcattagtaaatgcccagttgtgtgaactactgtctgtgtgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggtcttcgtgtaaagtttcattagtaaatgcccagttgtgtgaactactgtctgtgtgg 740

                                                                       
Query: 541 atgacgcaacctattctgttagtttacaacaaaaggctcaaaatatcaagccacagattt 600
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgaagcaacctattctgttagtttacaacaaaaggctcaaaatatcaagccacagattt 800

                                                                       
Query: 601 tgatcttttgtagattatcttattcaactttaacaaaatacagggattcaaggagaactt 660
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 801 tgatcttttgtagattatcttattcaactttaaaaaaatacagggattcaaggagaactt 860

                     
Query: 661 actttaatta 670
           ||||||||||
Sbjct: 861 actttaatta 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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