Query= MSMg01no453_f12.b1 MSMg01no453_f12.b1 CHROMAT_FILE:
MSMg01no453_f12.b1 PHD_FILE: MSMg01no453_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:11 2005
(572 letters)
>mm_chr3_147167041_147168012
Length = 972
Score = 1056 bits (546), Expect = 0.0
Identities = 563/570 (98%), Gaps = 4/570 (0%)
Strand = Plus / Plus
Query: 5 gaattctttttgtgacttgttaataaagatgacagaggtcataggtattagatgatatta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttttgtgacttgttaataaagatgacagaggtcataggtattagatgatatta 264
Query: 65 ctcacagttgcacaacagagtagtggatttagtctttgccttgagacttatattcatttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcacagttgcacaacagagtagtggatttagtctttgccttgagacttatattcatttt 324
Query: 125 taagcatgttctgttaagttttaatatcctgaaagaacagaaagtgttccttcgccttta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taagcatgttctgttaagttttaatatcctgaaagaacagaaagtgttccttcgccttta 384
Query: 185 ttatctccacattgccatttaagccgtcccgattatagcagcaatttactcattgtctgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttatctccacattgccatttaagccgtcccgattatagcagcaatttactcattgtctgt 444
Query: 245 gtacacacgccactttcccaacctttgtggaaattaatttcagccattactctcatctta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtacacacgccactttcccaacctttgtggaaattaatttcagccattactctcatctta 504
Query: 305 ttaaaaagacaggatctttttctttatatagcacaacagtaattcctttgcatggacctt 364
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 ttaaaaagacaggatctttttctttatatagcacaacagtaattcttttgcatggacctt 564
Query: 365 gtcaaatcgactggtcggtttccttttcttctaagtacattggacactgttactcttgtt 424
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 565 gtcaaatcgactggtcggtttccttttcttctaagtaccttggacactgttactcttgtt 624
Query: 425 tatcgaaatagattttgtaaaattggaaataaccttagtaatcatctgatttaatcctcc 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatcgaaatagattttgtaaaattggaaataaccttagtaatcatctgatttaatcctct 684
Query: 485 tattatgcagatgaagatgctgaggcttg--gatacagaatactaactcacttctgtcat 542
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 685 tattatgcagatgaagatgctgaggcttgttga--cagaatactaactcacttctgtcat 742
Query: 543 gcagcaaggaattaataagcagactccatg 572
||||||||||||||||||||||||||||||
Sbjct: 743 gcagcaaggaattaataagcagactccatg 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_f12.g1 MSMg01no453_f12.g1 CHROMAT_FILE:
MSMg01no453_f12.g1 PHD_FILE: MSMg01no453_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:11 2005
(516 letters)
>mm_chr3_147353781_147354696
Length = 916
Score = 420 bits (217), Expect = e-121
Identities = 283/311 (90%), Gaps = 20/311 (6%)
Strand = Plus / Minus
Query: 1 cagtaagaacaaacctcctaatct-agcat-tgtcaggactggacttctgcagacattaa 58
|||||||||||||||||||||||| | ||| | |||||||||||||||||||||||||||
Sbjct: 308 cagtaagaacaaacctcctaatctga-catct-tcaggactggacttctgcagacattaa 251
Query: 59 ctttgtgcttggttccttctctccttcttttgctccatcatcaaacctggttttttgggt 118
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ctttgtgctgggttccttctctccttcttttgctccatcatcaaacctggttttttgggt 191
Query: 119 ttcttttctttttttt-----tttctcacagtatttatatttttttatttttttaa--tt 171
|| |||| |||||||| ||||||||||||||||||||||||||||| || || ||
Sbjct: 190 tttttttgttttttttgtttttttctcacagtatttatatttttttatttcttaaaaatt 131
Query: 172 aggtatttt-cttt-ctttatttattaggtattttcttcatttacatttcaaatgctttc 229
||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 aggtatttttcttttctt-atttattaggtattttcttcatttacatttcaaatgctttc 72
Query: 230 ccaaaagtctcccataccc-cccccccgc-----gacttccctacccacccactcccact 283
||||||||||||||||||| ||||||| | |||||||||||||||||||||| |||
Sbjct: 71 ccaaaagtctcccataccctcccccccccaccccgacttccctacccacccactccaact 12
Query: 284 ccttggccctg 294
| |||||||||
Sbjct: 11 ctttggccctg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|