BAC Information

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BAC

Clone NameMSMg01-453F12
Chromosome3 (Build37)
Map Location 147,167,245 - 147,354,088
singlet/doubletdoublet
Overlap genenone
Upstream geneGng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
Downstream geneLOC100040354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453F12.T7 (MSMg01no453_f12.b1)MSMg01-453F12.TJ (MSMg01no453_f12.g1)
ACCAG540380AG540381
length776754
length of high quality
(start - end)
572 (54 - 625)516 (84 - 599)
definitionCHROMAT_FILE: MSMg01no453_f12.b1 PHD_FILE: MSMg01no453_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:11 2005CHROMAT_FILE: MSMg01no453_f12.g1 PHD_FILE: MSMg01no453_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,167,245 - 147,167,812)(147,353,781 - 147,354,088)
sequence
NNNNCCACCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTTTGTGACTTGTTAATAAAGATGACAGAGGTCATA
GGTATTAGATGATATTACTCACAGTTGCACAACAGAGTAGTGGATTTAGT
CTTTGCCTTGAGACTTATATTCATTTTTAAGCATGTTCTGTTAAGTTTTA
ATATCCTGAAAGAACAGAAAGTGTTCCTTCGCCTTTATTATCTCCACATT
GCCATTTAAGCCGTCCCGATTATAGCAGCAATTTACTCATTGTCTGTGTA
CACACGCCACTTTCCCAACCTTTGTGGAAATTAATTTCAGCCATTACTCT
CATCTTATTAAAAAGACAGGATCTTTTTCTTTATATAGCACAACAGTAAT
TCCTTTGCATGGACCTTGTCAAATCGACTGGTCGGTTTCCTTTTCTTCTA
AGTACATTGGACACTGTTACTCTTGTTTATCGAAATAGATTTTGTAAAAT
TGGAAATAACCTTAGTAATCATCTGATTTAATCCTCCTATTATGCAGATG
AAGATGCTGAGGCTTGGATACAGAATACTAACTCACTTCTGTCATGCAGC
AAGGAATTAATAAGCAGACTCCATGCCCATAGTGTTGAATCTGTTTGCAA
TGAATTGTGTCTACATCTTTCCTTCCTCTCTCAGCTCCTCGATCCTTTCT
CCCTTTTATTTTCTAGGCTGTGACTGTGTGTTGTATAGGTGTTTGTGTAT
AGATTTAACATTGTGCATCTCTGTCT
NNNTTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTAAGAACAAACCTC
CTAATCTAGCATTGTCAGGACTGGACTTCTGCAGACATTAACTTTGTGCT
TGGTTCCTTCTCTCCTTCTTTTGCTCCATCATCAAACCTGGTTTTTTGGG
TTTCTTTTCTTTTTTTTTTTCTCACAGTATTTATATTTTTTTATTTTTTT
AATTAGGTATTTTCTTTCTTTATTTATTAGGTATTTTCTTCATTTACATT
TCAAATGCTTTCCCAAAAGTCTCCCATACCCCCCCCCCGCGACTTCCCTA
CCCACCCACTCCCACTCCTTGGCCCTGGCATTCCCCTGTACTGAGGCATA
TAAAGTTTGCAAGACCAAGGGGCCTCTCTTCCCACTGATGGCTGACTAGG
CCATCTTCTCATACATATGCAGCTAGAGTCACCAACTCCGGGGGTACTGG
TTAGTTCATATTGTTGTTCCACCTATAGGGTTTCAGACCCCTTTAGCTCC
TTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGTTCCATCCAAT
AACTGACTGTGAGCATCCACATCTGTGTTTGCTAGGCCCCGGCATAGCCT
CACAAGAGACAGCTATATCAGGGTCCTTTCAGCAAAATCTTGCTGGTGTA
TGCAATGGTGTCAGCCTTTGGAGGCTGATTATGGGATGGATTCCTGGGTA
TGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_f12.b1 MSMg01no453_f12.b1 CHROMAT_FILE:
MSMg01no453_f12.b1 PHD_FILE: MSMg01no453_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:11 2005
         (572 letters)



>mm_chr3_147167041_147168012
          Length = 972

 Score = 1056 bits (546), Expect = 0.0
 Identities = 563/570 (98%), Gaps = 4/570 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttttgtgacttgttaataaagatgacagaggtcataggtattagatgatatta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttttgtgacttgttaataaagatgacagaggtcataggtattagatgatatta 264

                                                                       
Query: 65  ctcacagttgcacaacagagtagtggatttagtctttgccttgagacttatattcatttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcacagttgcacaacagagtagtggatttagtctttgccttgagacttatattcatttt 324

                                                                       
Query: 125 taagcatgttctgttaagttttaatatcctgaaagaacagaaagtgttccttcgccttta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taagcatgttctgttaagttttaatatcctgaaagaacagaaagtgttccttcgccttta 384

                                                                       
Query: 185 ttatctccacattgccatttaagccgtcccgattatagcagcaatttactcattgtctgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttatctccacattgccatttaagccgtcccgattatagcagcaatttactcattgtctgt 444

                                                                       
Query: 245 gtacacacgccactttcccaacctttgtggaaattaatttcagccattactctcatctta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtacacacgccactttcccaacctttgtggaaattaatttcagccattactctcatctta 504

                                                                       
Query: 305 ttaaaaagacaggatctttttctttatatagcacaacagtaattcctttgcatggacctt 364
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 ttaaaaagacaggatctttttctttatatagcacaacagtaattcttttgcatggacctt 564

                                                                       
Query: 365 gtcaaatcgactggtcggtttccttttcttctaagtacattggacactgttactcttgtt 424
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 565 gtcaaatcgactggtcggtttccttttcttctaagtaccttggacactgttactcttgtt 624

                                                                       
Query: 425 tatcgaaatagattttgtaaaattggaaataaccttagtaatcatctgatttaatcctcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 625 tatcgaaatagattttgtaaaattggaaataaccttagtaatcatctgatttaatcctct 684

                                                                       
Query: 485 tattatgcagatgaagatgctgaggcttg--gatacagaatactaactcacttctgtcat 542
           |||||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||
Sbjct: 685 tattatgcagatgaagatgctgaggcttgttga--cagaatactaactcacttctgtcat 742

                                         
Query: 543 gcagcaaggaattaataagcagactccatg 572
           ||||||||||||||||||||||||||||||
Sbjct: 743 gcagcaaggaattaataagcagactccatg 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no453_f12.g1 MSMg01no453_f12.g1 CHROMAT_FILE:
MSMg01no453_f12.g1 PHD_FILE: MSMg01no453_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:11 2005
         (516 letters)



>mm_chr3_147353781_147354696
          Length = 916

 Score =  420 bits (217), Expect = e-121
 Identities = 283/311 (90%), Gaps = 20/311 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtaagaacaaacctcctaatct-agcat-tgtcaggactggacttctgcagacattaa 58
           |||||||||||||||||||||||| | ||| | |||||||||||||||||||||||||||
Sbjct: 308 cagtaagaacaaacctcctaatctga-catct-tcaggactggacttctgcagacattaa 251

                                                                       
Query: 59  ctttgtgcttggttccttctctccttcttttgctccatcatcaaacctggttttttgggt 118
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ctttgtgctgggttccttctctccttcttttgctccatcatcaaacctggttttttgggt 191

                                                                       
Query: 119 ttcttttctttttttt-----tttctcacagtatttatatttttttatttttttaa--tt 171
           || |||| ||||||||     ||||||||||||||||||||||||||||| || ||  ||
Sbjct: 190 tttttttgttttttttgtttttttctcacagtatttatatttttttatttcttaaaaatt 131

                                                                       
Query: 172 aggtatttt-cttt-ctttatttattaggtattttcttcatttacatttcaaatgctttc 229
           ||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 aggtatttttcttttctt-atttattaggtattttcttcatttacatttcaaatgctttc 72

                                                                       
Query: 230 ccaaaagtctcccataccc-cccccccgc-----gacttccctacccacccactcccact 283
           ||||||||||||||||||| ||||||| |     |||||||||||||||||||||| |||
Sbjct: 71  ccaaaagtctcccataccctcccccccccaccccgacttccctacccacccactccaact 12

                      
Query: 284 ccttggccctg 294
           | |||||||||
Sbjct: 11  ctttggccctg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)