NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAGCAACCTTATCTGCTGGCTTCAAACCAGATTCAGGATA
GAAAGAGCCTGCAGCTGCTCTCAATACATTATTTCATGACACTGGATGCC
ATTTATATAAAACCTTGAAATGGATTGTCTGCCCCCAGCATCCTGGAAAC
ACAGAATAGCCTTTGAGAGCTGGAAGGCGCCTGAGCCCAGCCTCCTCATT
TTGTAGAAAAGTACCCGAAGGACCTGAGAGGTTAAATGACTAGCTCAAAT
CCACAAAGCCACTCACAGCTTGACTAGGCATAAAACCAAAGTTTCCAGAG
ATAACTAAACTGCTATTTCTAGAAAATAACCCTCTTTGGAGGCTGGAAAT
CCCTTGAAATAGCCTATCCTATACATTATATTTAACACCTTTTATTTGAT
GTATTTCTTACAATGACCTAATTTTTAAAATTCCAACTTGGAAGGGGTTG
CAACTAGGGTTTCACTTTTAAAGACTAAGTCTCACAGTTGGTTCTGATGC
ACAAGGCACACTTCCAGTTTTATATTCGCCCCCCCCCATGCATTCTGCTC
GGTGCACAGTGATCATCGAGATCCTGCTTCGTCAGTTGATTTTGGAGAAG
GGATTGAAGGCAATTCAGTGCATAGATTTTTAGTTTTTCATTTTTATTTT
TCCATTCTTGCCTAATAAGCTATTTGAAAATTTCTGCTGGGTAGAA

GGGGACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGTCATGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTG
GAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACAGGAGA
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGT
AAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGA
AAGTGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCT
GAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGA
TAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATACAAT
TTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGN

Query= MSMg01no453_k04.b1 MSMg01no453_k04.b1 CHROMAT_FILE:
MSMg01no453_k04.b1 PHD_FILE: MSMg01no453_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:34 2005
         (694 letters)



>mm_chr3_7078048_7079142
          Length = 1095

 Score = 1069 bits (553), Expect = 0.0
 Identities = 586/597 (98%), Gaps = 3/597 (0%)
 Strand = Plus / Minus

                                                                        
Query: 100  catttatataaaaccttgaaatggattgtctgcccccagcatcctggaaacacagaatag 159
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1095 catttatataaaaccttgaaatggattgtctgcccccagcatcctggaaacacagaatag 1036

                                                                        
Query: 160  cctttgagagctggaaggcgcctgagcccagcctcctcattttgtagaaaagtacccgaa 219
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 cctttgagagctggaaggcgcctgagcccagcctcctcattttgtagaaaagtacccgaa 976

                                                                        
Query: 220  ggacctgagaggttaaatgactagctcaaatccacaaagccactcacagcttgactaggc 279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975  ggacctgagaggttaaatgactagctcaaatccacaaagccactcacagcttgactaggc 916

                                                                        
Query: 280  ataaaaccaaagtttccagagataactaaactgctatttctagaaaataaccctctttgg 339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915  ataaaaccaaagtttccagagataactaaactgctatttctagaaaataaccctctttgg 856

                                                                        
Query: 340  aggctggaaatcccttgaaatagcctatcctatacattatatttaacaccttttatttga 399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855  aggctggaaatcccttgaaatagcctatcctatacattatatttaacaccttttatttga 796

                                                                        
Query: 400  tgtatttcttacaatgacctaatttttaaaattccaacttggaaggggttgcaactaggg 459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795  tgtatttcttacaatgacctaatttttaaaattccaacttggaaggggttgcaactaggg 736

                                                                        
Query: 460  tttcacttttaaagactaagtctcacagttggttctgatgcacaaggcacacttccagtt 519
            ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 735  tttcacttttaaagactaactctcacagttggttctgatgcaaaaggcacacttccagtt 676

                                                                        
Query: 520  ttatattcgcccc-cccccatgcattctgctcggtgcacagtgatc-atcgagatcctgc 577
            |||||||  |||| ||||||| ||||||||| |||||||||||||| || ||||| ||||
Sbjct: 675  ttatatta-ccccacccccatccattctgctaggtgcacagtgatctatagagatactgc 617

                                                                        
Query: 578  ttcgtcagttgattttggagaagggattgaaggcaattcagtgcatagatttttagtttt 637
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616  ttcctcagttgattttggagaagggattgaaggcaattcagtgcatagatttttagtttt 557

                                                                     
Query: 638  tcatttttatttttccattcttgcctaataagctatttgaaaatttctgctgggtag 694
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556  tcatttttatttttccattcttgcctaataagctatttgaaaatttctgctgggtag 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1095
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1085
Effective search space:   742140
Effective search space used:   742140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)