BAC Information

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BAC

Clone NameMSMg01-455A22
Chromosome3 (Build37)
Map Location 53,481,338 - 53,481,941
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039832, Cog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1
Downstream geneLOC621155, Ufm1, EG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807, B020017C02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455A22.T7 (MSMg01no455_a22.b1)MSMg01-455A22.TJ (MSMg01no455_a22.g1)
ACCAG541687AG541688
length732761
length of high quality
(start - end)
608 (44 - 651)432 (76 - 507)
definitionCHROMAT_FILE: MSMg01no455_a22.b1 PHD_FILE: MSMg01no455_a22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:27 2005CHROMAT_FILE: MSMg01no455_a22.g1 PHD_FILE: MSMg01no455_a22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTACAGGTTGAGTAGTTCCTCTGAGTAATATTACATAGAATACAAGT
TAGGAAAATCAGTGTTTAGTAACGCACCTTTGGCCCCATCTCAAGACAAA
GAAGAGAGAAACAATCACTTCGTGAAAATAAGATGAAACATCAAGAAAAA
CTCAGACTCCTTTCTTCCACCATTTATTTTAAAGTAAAGAGACCAAGGGA
ATTTTTTTCCCTGCTTAATGAAATGAGGTTCTCTTCTTTCCTAATTTGAC
ATAGGAATTAAAGTTCAGTACAATTTTTTTACTTAATTACAATGTAGCAA
GACTAAGGAAGGCTTAAGAAGCAGGAGTTAATCTTTAAGCAAAGCTAAAA
TAGGAGCACTCCTGTCAAGGTGTCTGTCCTTCATTGCTGCTGTGCTTCAT
TTACATAAATCTCACCTTAAACCAAATGACTTCATATCACATTCTTAGAA
AGCTTAACTAAGGATGTCCTGTTTGAAGATAAATAGGCAGATTTAACTCA
TTTATCCTTCACTCACAAAATTTTATAGTTCTCTGAACTATGACTTATTT
TCCCCTCACTAGATTTTAGTGCTATATACCTTTTTAAAAATTCTGAACAC
TTTTTTTTTTTTTTTTTGGTAAGTAGGGTCCGAAGGGAGTGTGGCCTTGT
TGTCTATTTCTGCCTCTTTTATTGAATAATAC
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTTGCAGTGTTAAGAGAAAATATG
TGCTTGCTGTCTACTAAAAATCAAAGGTCTGGGTCAAGGGATGCTGGGTC
GTAGGATAATCAAAAGAAAGCCTGGGATAAATAACTGAACTGATATGTAA
ATAAAAAGCTGGACTTTTGATCGGCGTGGGATGCGCTAGGAGAAAGTAAG
AGCAGTTCTGTTTTAGACTTTTCTCTAGAGAAAGCTGAGCTGTCAGGAGA
TCTCTGGAGGCCAAAAACAGCTCTTCAAGAATTTTTTCTAACAGGATTTT
TTGACTTGGTTGGAAGATCCAATAATTTTTATAGCAGCTTTTCTGACTTT
GGTCAGAAAAACCCATGAGCTATCTAGATAGCTTTTAGAATTTTTACTAG
CAGAGAAAGCTGTCTCATTCAGAGAATTTTTTAGAATAGCTGTCTAGAGC
AGAGCAGAAAACACACACACACACACACACTCTTAGAGAGAGAGAGAGAG
AGACTGTGTTTCTCTTTATATACAAGCTTTACTTTGCATTTGTTACTTCA
GATAAACCTATTTCAGACTAATAGATAAGATGATCTCCCCTTTTAAAATG
ATTATATTTTTGTGGCTTCAGGGTAAATCAACTCCTCCTCGTGGTGCCCT
GAAATGTTTCTTAACTCTTTCTTTTTTTTAAGCCCTTCTTTTTTTTTTTA
TACCTCCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_a22.b1 MSMg01no455_a22.b1 CHROMAT_FILE:
MSMg01no455_a22.b1 PHD_FILE: MSMg01no455_a22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:27 2005
         (608 letters)



>mm_chr3_53481134_53482141
          Length = 1008

 Score = 1114 bits (576), Expect = 0.0
 Identities = 597/604 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctacaggttgagtagttcctctgagtaatattacatagaatacaagttaggaaa 64
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattcctacaggttgagtagttcctctgagtaatattacatagaataaaagttaggaaa 264

                                                                       
Query: 65  atcagtgtttagtaacgcacctttggccccatctcaagacaaagaagagagaaacaatca 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atccgtgtttagtaacgcacctttggccccatctcaagacaaagaagagagaaacaatca 324

                                                                       
Query: 125 cttcgtgaaaataagatgaaacatcaagaaaaactcagactcctttcttccaccatttat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttcgtgaaaataagatgaaacatcaagaaaaactcagactcctttcttccaccatttat 384

                                                                       
Query: 185 tttaaagtaaagagaccaagggaatttttttccctgcttaatgaaatgaggttctcttct 244
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttaaagtaaagagaccaagggattttttttccctgcttaatgaaatgaggttctcttct 444

                                                                       
Query: 245 ttcctaatttgacataggaattaaagttcagtacaatttttttacttaattacaatgtag 304
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 445 ttcctaatttgacataggaattaaagttcagtacaattttttaacttaattacaatgtag 504

                                                                       
Query: 305 caagactaaggaaggcttaagaagcaggagttaatctttaagcaaagctaaaataggagc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caagactaaggaaggcttaagaagcaggagttaatctttaagcaaagctaaaataggagc 564

                                                                       
Query: 365 actcctgtcaaggtgtctgtccttcattgctgctgtgcttcatttacataaatctcacct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 actcctgtcaaggtgtctgtccttcattgctgctgtgcttcatttacataaatctcacct 624

                                                                       
Query: 425 taaaccaaatgacttcatatcacattcttagaaagcttaactaaggatgtcctgtttgaa 484
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 625 taaaccaaatgacttcatatcacattcttagaaagcttaaccgaggatgtcctgtttgaa 684

                                                                       
Query: 485 gataaataggcagatttaactcatttatccttcactcacaaaattttatagttctctgaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gataaataggcagatttaactcatttatccttcactcacaaaattttatagttctctgaa 744

                                                                       
Query: 545 ctatgacttattttcccctcactagattttagtgctatatacctttttaaaaattctgaa 604
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctatgacttattttaccctcactagattttagtgctatatacctttttaaaaattctgaa 804

               
Query: 605 cact 608
           ||||
Sbjct: 805 cact 808


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)