BAC Information

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BAC

Clone NameMSMg01-455C16
Chromosome3 (Build37)
Map Location 97,567,267 - 97,567,762
singlet/doubletsinglet
Overlap genePde4dip
Upstream geneZfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9, Olfr1402, Chd1l, Fmo5, Prkab2
Downstream geneSec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455C16.T7 (MSMg01no455_c16.b1)MSMg01-455C16.TJ (MSMg01no455_c16.g1)
ACCAG541771AG541772
length722706
length of high quality
(start - end)		588 (69 - 656)497 (57 - 553)
definitionCHROMAT_FILE: MSMg01no455_c16.b1 PHD_FILE: MSMg01no455_c16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:36 2005CHROMAT_FILE: MSMg01no455_c16.g1 PHD_FILE: MSMg01no455_c16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGCCTGTCCTAATGGTAGAAAACGTCACATGAAGGAAAGAAGA
CAGGATGAGGGATTCAGAGACTATCATGAATCCCCATGTGTCCTGGAAGT
GCATGAAGACAGAGTATCCCCATTCAGTATTGGTGGGAACACCAATTAGC
ACAATCATGAAAATGGCAAGTTGCTCATACATCTAGGACTAGAACAGTAA
TATGACGGAGCAGTTCCCCTACTGCACATATATCTAAAGAAGCGATCATC
TGTTTCAGAGAGCTATCTGCACCTCCATGCTTACTGCAGCTGATTTTCTA
ACAACAGCCAAAAGGTAGAATTGGAGGACACCATGCTGGAGGGACGGCAG
TGGGCAAGTGGAGAGGCACAGCCCCGGGGGCTTCATTTCTGGCTTGCTTC
TAGCTGCTGTTTGCCGTTGCTGTCTTTCTCATATATCTAATGTGGTGTGA
GTGGGTCTGGGAAGACCCTCACTGCCTATAGTCTGGTGTGGTTGCCTCTT
GGGAGACAGCCCACTCTGTTGGGCAACTTTCCTACACATCGGTATGAAGA
TGAACTTTCATAAAATAATATCGTTTAGATGAAACTAATGATATATATAT
CCTTTTGAGACAAGAGTCTTGCTGTGTAGCCTAAACTGATCTCACTTCCT
CAGCTTTCTGAGTGGCAGGATT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAAAGAGCACACCTTTGCCTCATACCTTACAATGTCAAGGTCTTC
TGTTTGGGGACTATGGTGAATTTGTCCCATTTAATACCTTAGTCATTTAT
TTAGGCGGATCAGACCCTTTGAAAAATGTAGACATTAGATAATAGTCATA
GGCTGGGCCTTTAATTTTATGCTAGCTGATGGTTCTTGTTTGTCTCTGAT
GATTAACAACAGGATAGAAAATGATAGCAGTTTGAGATCTGTGACTCACT
ATTGTAAGGGAAGGAACATGCCAGGAAAGTGCTGTTAATCAGAGGTAAGA
ACTCTGCTTTTTAGCCTTGTGCGGCACTGGGCCTGGGCTCTGCTTTCCTT
TCCAGATTGATAAAGCGTGCATACCAACTCCGACCTGAAAACGATTAATC
TGAAAGAACATCATGCTTAAGTCATGGCCTTAGAAGCCAAGCGTCTGGGA
GTGACCCTGATGCTACTAAACTAAGGACCACTGATCTCGAGCTCTGTAGG
TTGTCTGGGATTCCATAAGCTTGTGTGTTTGGTACTTTACAAGAGCTTAG
TGCACATTCCTGATCCAGAAGAACATAGTAAGTGCCCCTTTGGGGTCTCT
GAAAAGGGATTTTCTCTGCAATAAAAGAATAATTATGAAGAAAGGAGAAT
GGAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_c16.g1 MSMg01no455_c16.g1 CHROMAT_FILE:
MSMg01no455_c16.g1 PHD_FILE: MSMg01no455_c16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:36 2005
         (497 letters)



>mm_chr3_97567067_97567962
          Length = 896

 Score =  930 bits (481), Expect = 0.0
 Identities = 493/497 (99%), Gaps = 1/497 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagagcacacctttgcctcataccttacaatgtcaaggtcttctgtttggggactatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 aaagagcacacctttgcctcataccttacaatgtcaaggtcttctgtttggggactatgg 637

                                                                       
Query: 61  tgaatttgtcccatttaataccttagtcatttatttaggcggatcagaccctttgaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tgaatttgtcccatttaataccttagtcatttatttaggcggatcagaccctttgaaaaa 577

                                                                       
Query: 121 tgtagacattagataatagtcataggctgggcctttaattttatgctagctgatggttct 180
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tgtagacattagataatagttgtaggctgggcctttaattttatgctagctgatggttct 517

                                                                       
Query: 181 tgtttgtctctgatgattaacaacaggatagaaaatgatagcagtttgagatctgtgact 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 516 tgtttgtctctgatgattaacaacaggatag-aaatgatagcagtttgagatctgtgact 458

                                                                       
Query: 241 cactattgtaagggaaggaacatgccaggaaagtgctgttaatcagaggtaagaactctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cactattgtaagggaaggaacatgccaggaaagtgctgttaatcagaggtaagaactctg 398

                                                                       
Query: 301 ctttttagccttgtgcggcactgggcctgggctctgctttcctttccagattgataaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ctttttagccttgtgcggcactgggcctgggctctgctttcctttccagattgataaagc 338

                                                                       
Query: 361 gtgcataccaactccgacctgaaaacgattaatctgaaagaacatcatgcttaagtcatg 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gtgcataccaactctgacctgaaaacgattaatctgaaagaacatcatgcttaagtcatg 278

                                                                       
Query: 421 gccttagaagccaagcgtctgggagtgaccctgatgctactaaactaaggaccactgatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gccttagaagccaagcgtctgggagtgaccctgatgctactaaactaaggaccactgatc 218

                            
Query: 481 tcgagctctgtaggttg 497
           |||||||||||||||||
Sbjct: 217 tcgagctctgtaggttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 896
Length adjustment: 10
Effective length of query: 487
Effective length of database: 886
Effective search space:   431482
Effective search space used:   431482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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