Query= MSMg01no455_f09.b1 MSMg01no455_f09.b1 CHROMAT_FILE:
MSMg01no455_f09.b1 PHD_FILE: MSMg01no455_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:49 2005
(644 letters)
>mm_chr3_45200024_45201067
Length = 1044
Score = 1203 bits (622), Expect = 0.0
Identities = 640/646 (99%), Gaps = 3/646 (0%)
Strand = Plus / Plus
Query: 1 atatgtgttacttacctaagtgacaaaatcctgaataattaaaacaattctaagatatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatgtgttacttacctaagtgacaaaatcctgaataattaaaacaattctaagatatag 260
Query: 61 ttggatccactcctgcatatattttagtgttacatttttctcttaagattttttttgtca 120
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 261 ttggatccactcctgcatatattt-attgttacatttttctcttaagattttttttgtca 319
Query: 121 gtgaatcggtgtggtacaatttagacagcaggggcaaggcagtaataaatgcataagaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtgaatcggtgtggtacaatttagacagcaggggcaaggcagtaataaatgcataagaat 379
Query: 181 aaacaaagaaaatttccaatgatttttt-aaaatatatgttcatttatgtcctctttcac 239
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 380 aaacaaagaaaatttccaatgatttttttaaaatatatgttcatttatgtcctctttcac 439
Query: 240 tcaagcttccttccataaattgtgatatagatttttgaaatgctcaacatattgaatgaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcaagcttccttccataaattgtgatatagatttttgaaatgctcaacatattgaatgaa 499
Query: 300 gtaattcaacttcacagatgcaatggtctcgaaaacttcttaaactcatggagttttcta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtaattcaacttcacagatgcaatggtctcgaaaacttcttaaactcatggagttttcta 559
Query: 360 gacttaacagtttagatcagtggttctcaaccttcaaactgctgggaccctccaatactg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gacttaacagtttagatcagtggttctcaaccttcaaactgctgggaccctccaatactg 619
Query: 420 ttccttatgttgtggctactcctgaccataaaatttttttg-gttcttacttcataactg 478
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 620 ttccttatgttgtggcaactcctgaccataaaatttttttttgttcttacttcataactg 679
Query: 479 taatttttttgcaaatcataatgtaaatatatgtgttttctggtggttttaggtaacccc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 taatttttttgcaaatcataatgtaaatatatgtgttttctggtggttttaggtaacccc 739
Query: 539 tgtgaaaaggtcctttgacccaacaggatttcaactcacagttgtgaacaatttgtttag 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgtgaaaaggtcctttgacccaacaggatttcaactcacagttgtgaacaatttgtttag 799
Query: 599 agggaatgactaatgcaaacttactctagtccatttggctttgaca 644
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 agggaatgactaatgcaaacttactctagtccatttggctttgaca 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no455_f09.g1 MSMg01no455_f09.g1 CHROMAT_FILE:
MSMg01no455_f09.g1 PHD_FILE: MSMg01no455_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:49 2005
(503 letters)
>mm_chr3_45366232_45367135
Length = 904
Score = 936 bits (484), Expect = 0.0
Identities = 499/504 (99%), Gaps = 1/504 (0%)
Strand = Plus / Minus
Query: 1 caggtttttccatgaatgcaatacaaaggaacctcagatggattttaaaaactatgttag 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 caggttttaccatgaatgcaatacaaaggaacctcagatggattttaaaaactatgttag 645
Query: 61 ccttttgtagaacctgagggagacaaatgatgagttcatttgcttgtttgcttttgattt 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 644 ccttttgtagaacctgagggagacaaatgatgagtttatttgcttgtttgcttttgattt 585
Query: 121 tgtttctgtatttttgctgaagctaaaattctgtgtagtagtagaacattcaacaaagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tgtttctgtatttttgctgaagctaaaattctgtgtagtagtagaacattcaacaaagca 525
Query: 181 cttctgtggaaagacacttcagagagacataactaagctcagttagttttacaacatctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 cttctgtggaaagacacttcagagagacataactaagctcagttagttttacaacatctg 465
Query: 241 gaatagttatggattcattatacagaggtgatagag-ccccccaccgaaagaaacagttg 299
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 464 gaatagttatggattcattatacagaggtgatagagccccccccccgaaagaaacagttg 405
Query: 300 aaactgacatataccacttcagaatctttgattccctgagaatgagtatcactgagtgaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aaactgacatataccacttcagaatctttgattccctgagaatgagtatcactgagtgaa 345
Query: 360 attaagaaactggcatgtgttttatttaacaaaagtttttaaggataaaataaagcaagg 419
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 attaagaaactgccatgtgttttatttaacaaaagtttttaaggataaaataaagcaagg 285
Query: 420 gtcttttaaaaagctgacttctcatgagttacattggcacaatggttgactgaattaaac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gtcttttaaaaagctgacttctcatgagttacattggcacaatggttgactgaattaaac 225
Query: 480 acaaattcagaaagcctagtttag 503
||||||||||||||||||||||||
Sbjct: 224 acaaattcagaaagcctagtttag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 904
Length adjustment: 10
Effective length of query: 493
Effective length of database: 894
Effective search space: 440742
Effective search space used: 440742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
