BAC Information

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BAC

Clone NameMSMg01-455I01
Chromosome3 (Build37)
Map Location 37,907,924 - 37,908,449
singlet/doubletsinglet
Overlap genenone
Upstream gene4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811
Downstream geneEG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824, Fat4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455I01.T7 (MSMg01no455_i01.b1)MSMg01-455I01.TJ (MSMg01no455_i01.g1)
ACCAG542027AG542028
length725732
length of high quality
(start - end)
526 (76 - 601)579 (73 - 651)
definitionCHROMAT_FILE: MSMg01no455_i01.b1 PHD_FILE: MSMg01no455_i01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:02 2005CHROMAT_FILE: MSMg01no455_i01.g1 PHD_FILE: MSMg01no455_i01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTTTTTACCGAGAGGGATAACTCGTCAGAGTGAAGAAACAA
AAATGCAAGTGAATCCAGATGAGGACAACCTTCCCTCAGGTAGGCCCTCC
GTCAGACTGCCTCATTCTTAGCATCCATTCGGCATGTGGAAAAATTCATA
AACTGGCAAAATCACAGAATTTCTACTCCCCCCAGGCTGTATGCCAAATC
AAACCACTCTCTTTAATTACAGGTGAATAATAATACCCTTAAATTTCTTG
CAAATGACATCAGCTTGCTCTAGCTCTGTGGCTGAGGGCAGGTATTGAGT
GAAGGCTTTAATTCAGCACAGCCAGCTGCGTCTTGCTGCACTTCCTATTT
GTGGGGGCGGTGGGATCTGGCCTGTTTTGGAGGTGGAAGCAGGTGTCAAA
CAGAAGACACTTGTGTGATTGAGTGCCCTGTTAGAGAGGCAGCTGGGGTT
AAGTGTGCCAGAGGGAGATGAGCTGTTTGGTTGAACGTTAATACCTTTGT
GTGAGGGTGTGTTCAGATTTGTTCCTTTGCCCAGGACTGAGGATGGCCCC
TCGCAGCAATCCAAAGCTGGGGTGGAGCTGCTGTCACTTTTGAAAGTACC
TTGTAGCAGAGAGTCCGATGCCTTTGTTCCAGGATGAGGAGCAGGCTATC
CTGTGAACCAGGCCTTCCCAGTGAG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCCGAGAAATACGGAATGGCAGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGAGAAATGCAAATC
AAAACAATCCTGAGATTCCACCTCACACCAGTCCGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGAAGAAAGAGAAACCC
TCCCGCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCA
GTCTGGTGGTTCCTCCGAAAATTGGGCATAGTACTACCGGAGGATCCCGC
AATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAAAAAATGTG
GTACATTTACACAATGGAGTACTATTCACCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGGCAAATGGTTGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACAATCACAAAAGAACTCAAATGATATGTTCTCACTGATAAGTGG
ATAGTAGCCCAGAAACTTAGTATAGCGAGATATAAGGTACAATTTGCAAA
ACTCATGATACTGAATATGACCGAACATCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_i01.b1 MSMg01no455_i01.b1 CHROMAT_FILE:
MSMg01no455_i01.b1 PHD_FILE: MSMg01no455_i01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:02 2005
         (526 letters)



>mm_chr3_37907724_37908649
          Length = 926

 Score = 1009 bits (522), Expect = 0.0
 Identities = 525/526 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataactcgtcagagtgaagaaacaaaaatgcaagtgaatccagatgaggacaaccttccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataactcgtcagagtgaagaaacaaaaatgcaagtgaatccagatgaggacaaccttccc 260

                                                                       
Query: 61  tcaggtaggccctccgtcagactgcctcattcttagcatccattcggcatgtggaaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaggtaggccctccgtcagactgcctcattcttagcatccattcggcatgtggaaaaat 320

                                                                       
Query: 121 tcataaactggcaaaatcacagaatttctactccccccaggctgtatgccaaatcaaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcataaactggcaaaatcacagaatttctactccccccaggctgtatgccaaatcaaacc 380

                                                                       
Query: 181 actctctttaattacaggtgaataataatacccttaaatttcttgcaaatgacatcagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actctctttaattacaggtgaataataatacccttaaatttcttgcaaatgacatcagct 440

                                                                       
Query: 241 tgctctagctctgtggctgagggcaggtattgagtgaaggctttaattcagcacagccag 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctccagctctgtggctgagggcaggtattgagtgaaggctttaattcagcacagccag 500

                                                                       
Query: 301 ctgcgtcttgctgcacttcctatttgtgggggcggtgggatctggcctgttttggaggtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgcgtcttgctgcacttcctatttgtgggggcggtgggatctggcctgttttggaggtg 560

                                                                       
Query: 361 gaagcaggtgtcaaacagaagacacttgtgtgattgagtgccctgttagagaggcagctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaagcaggtgtcaaacagaagacacttgtgtgattgagtgccctgttagagaggcagctg 620

                                                                       
Query: 421 gggttaagtgtgccagagggagatgagctgtttggttgaacgttaatacctttgtgtgag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggttaagtgtgccagagggagatgagctgtttggttgaacgttaatacctttgtgtgag 680

                                                         
Query: 481 ggtgtgttcagatttgttcctttgcccaggactgaggatggcccct 526
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtgtgttcagatttgttcctttgcccaggactgaggatggcccct 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)