AATCTAGTCCTCTTANANNCNNATTTCCCAAAACCNCNAATTCCACATTT
CCTCTCCATTGCTGANAACACCTAANAAATGTTCAATCCTTANTGATCTA
CAATANAATCAAATGACCCNANATCTACTTATCCATCCNAATGCCTAAAT
CAAACTTCCNTGACACCCATTCTCTAAAAATTTCAAAAAAAAACACCCTC
CATCAAANNNATTTCNTCTTNATCCNTTACCAACTTTTTAAAAACNNCAT
CCACCGTCCACCTTTTTTAACACTCTTTTTCCCCAATTTTTTTTCTTCTC
CAACCTTTTACCTCTTTTTTTTTCCCTTTTTCCCCCCCTCCTTAATTTTT
TTATTTTTATAAAATTTTTTTCTCTCTTTTTATTTCTCCCCTCTTTCCTT
CTCTTTTTTTTACATTTTTTTTTCCCTTCTTTATCTTTCTTTAATCATTT
TATTTTTTTTCTTTTTTTTTCAATTCTTTCTTCCTTTTTTTCCTTTTATT
ATTTTTCTCTTTTTTTCTTTCTATCTCTTCTCTCTTTTTCTTTATTCATT
TCTCCCTTTTTTCTCTTTATTATATTTTTACTCTCTTTTTTTTATTTCTT
CTCTGTTTTCCGTTTTTT

CATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGCAGAGACTTTGTCCCAGTTCCTC
CACTTGCTCAGGCAGAGCTCAGTAAGAAAAGAAGAGGCAAGGAGATATAA
AGATTAACAGTAAGGCTAAGTACTGAATATCTTGGGGTTAGCAACAGTAT
CCTCATTACCTGGTTTTAGTTTACTTTATTCCTTGTTTCTTTTTTTTTTC
TTTTTTCATTGCATCAGCAAGTACATGTCCTGTTATGTGCTCTTCCTGTT
TGTACCATGTCCTCTCCTCTCTGTGTATATATATACACACACACACACAC
ACACACACACACACACACACACACACACACACACATATATATATATATAT
GTATGTATATATATATGGCCTTCAGTTTAGATGGGACTCCTGAGTATGAT
ATTGAGTGTGTCTCTGATTTTTATGCCTTCTCTTGGATTCTTTTACTTTT
TGTGATTCGCCTTGTCCAACTTTGATGTGAGGGGTTTTATTGTGTCTTGC
TAAACTTGGCTTGACTCCACACTGTGGGGTCAAATTTCCAAAAAAATCCT
GGTTTGAAAATAAAAATTGGGTATAATCCCTCCCAAAAAAAATACCAAAC
AATTTTTGGACAAATTTGCCCTACCTTCTTCCTAACCCTATGGATAAAAA
ACTTTCCCTGGTTTCCAAAGGGGTGGGGAACATTTCCTTTTTTTAATAA

Query= MSMg01no455_k24.g1 MSMg01no455_k24.g1 CHROMAT_FILE:
MSMg01no455_k24.g1 PHD_FILE: MSMg01no455_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:16 2005
         (408 letters)



>mm_chr3_118685274_118686084
          Length = 811

 Score =  431 bits (223), Expect = e-125
 Identities = 309/373 (82%), Gaps = 57/373 (15%)
 Strand = Plus / Minus

                                                                       
Query: 12  tttgtcccagttcctccacttgctcaggcagagctcagtaagaaaagaagaggcaaggag 71
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tttgtcccagttcctccacttactcaggcagagctcagtaagaaaagaagaggcaaggag 395

                                                                       
Query: 72  atataaagattaacagtaaggctaagtactgaatatcttggggttagcaacagtatcctc 131
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 394 atataaagattaacagtaaggctaagtactgaatatcttggggttagccacagtatcctc 335

                                                                       
Query: 132 attacctggttttagtttactttattccttgtttctttttttttt---cttttttcattg 188
           || |||| |||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 334 atcacctagttttagtttactttattccttgtttctttttttttttttcttttttcattg 275

                                                                       
Query: 189 catcagcaagtacatgtcctgttatgtgctcttcctgtttgtaccatgtcctctcctctc 248
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 274 catcagcaagtacatgtcctcttatgtgctcttcctgtttgtaccatgtcctctcctctc 215

                                                                       
Query: 249 tgt--gtatatatatacacacacacacacacacacacacacacacacacacacacacaca 306
           |||  |||||||||||                                            
Sbjct: 214 tgtatgtatatatata-------------------------------------------- 199

                                                                       
Query: 307 cacacatatatatatatatatgtatgtatatatatatggccttcagtttagatgggactc 366
                 ||||||||||||||| ||| ||||||||||  ||||||||||||||||||||||
Sbjct: 198 ------tatatatatatatatatatatatatatata--gccttcagtttagatgggactc 147

                        
Query: 367 ctgagtatgatat 379
           |||||||||||||
Sbjct: 146 ctgagtatgatat 134


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 811
Length adjustment: 9
Effective length of query: 399
Effective length of database: 802
Effective search space:   319998
Effective search space used:   319998
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)