BAC Information

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BAC

Clone NameMSMg01-456C17
Chromosome3 (Build37)
Map Location 85,232,245 - 85,232,472
singlet/doubletsinglet
Overlap genenone
Upstream gene6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
Downstream geneLOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a, LOC634201, Lrba
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456C17.T7 (MSMg01no456_c17.b1)MSMg01-456C17.TJ (MSMg01no456_c17.g1)
ACCAG542535AG542536
length740790
length of high quality
(start - end)
235 (74 - 308)251 (63 - 313)
definitionCHROMAT_FILE: MSMg01no456_c17.b1 PHD_FILE: MSMg01no456_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:54 2005CHROMAT_FILE: MSMg01no456_c17.g1 PHD_FILE: MSMg01no456_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCGCGG
AATTCACTGATTACCAGAGAGAACAAGCTACCTAGAGGTGAGGAGTAGGG
TGGGGTGAGCTCTATAGGGCTCCTGGGACACCTGCCCCTACAGAGGGCAG
AACTCTATCTCCAGAGACTGACCATAGACCTAGGAGAGCTTTGAGGAGAG
GGGATGGAACTGGACTAGAAGTCACTAGATTGGGTGGATCTATCCAGATG
TCTTCGTGCCCTCTGGTGGGCAGGGGGGGGTTCTAAGAATCAGATATTAA
AGCACTTCTCCTTACTGCTCTGTTATCACACACTTTTGTCCTGCCCACAG
TAGTAGTCTCTGAAACTCCTGTCCTTTTAGACATTTAGTGTTAAAAGGAA
CTTGTTATATAAACCCCCCAAATGTTAAAGATGCATTTATCGTCTTGTTT
CAGAATCCTCCAGACTCCTCATTGTTTTGCTTCCAAGTGCTTACCCATTT
GTCCCTGCGTACATGCTCAGATTTTTATTTGCGACACTGCCCCCTCCTCC
TGACTGAATTTGCCTGATCTCTCTGCCTTTCGCGCTCTTTCCGTTTTTTC
CATTGTCCCCCGAGGTTTCTTCACTCTCTTACGTTCGTTTTTTTCCTGGT
CCGCCCCCGCTGCATCTATTTTGGTGTTCCTTACCATCTCTTGCTCCTGG
TTGCCATCTTTAATATCCGCCCCCTTCTTTTTCTTCACTT
NCCCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCGAGGAATTCTTTGTTCAGTTCTGAGCCCCATTTT
TTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATA
TATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTT
CCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTG
TTTTTTCTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTAC
AGCACAAGCCATTGCTGGCCCTGCCTGGAAATCTTCCCCTGGGCCCATAT
CATCTTTGTTTCTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGT
TTTATGTGAGGGCCCCCCCCCCCTTTTACATTTGTAGCCTTCTTCTTTGG
TCTTGATGTTTTTGCTAGCCCGGGTTCTGGGGCGCCTTTGCTGGTTGGTT
GGTGTTTGGTGCTCCCTATGTGTCGATCTGTTTTTAGTGGTGGTTTGTGC
TTTTAGTTTTTTGTTGGGCTTTTTCTTTGTGTTGGATTTTTTCGTGTTCT
GATCTCCTGGTTCGTTTTTTTGTCCTTTTTCTTTTGGCGTGCCCCGGCTT
TTTGTGCGCTGTTTCTTTTTTTTCTTTTTTTTTTTTGTTGGTTTTCCAGG
TCTCTTTCCCTCTTTCTTCTGTTTTTTCTGTTTTATTGTGTTGTTGACCA
GCGTTTTTTTTCTGCGGTTCGCTTTTATTCTCTCTGATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_c17.b1 MSMg01no456_c17.b1 CHROMAT_FILE:
MSMg01no456_c17.b1 PHD_FILE: MSMg01no456_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:54 2005
         (235 letters)



>mm_chr3_85232045_85232680
          Length = 636

 Score =  331 bits (171), Expect = 3e-95
 Identities = 218/237 (91%), Gaps = 11/237 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagctacctagaggtgaggagtagggtggggtgagctctatagggctcctgggacacct 60
           |||||||||||||||||||||||||| ||||||||| |||| |||| |||||||||||||
Sbjct: 201 caagctacctagaggtgaggagtaggatggggtgagttctaaagggttcctgggacacct 260

                                                                       
Query: 61  gcccctacagagggcagaactc-tatctccagagactgaccatagacctaggagagcttt 119
           |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 261 gcccctacagagggcagaactcttatctccagagactgaccatagacctgggagagcttt 320

                                                                       
Query: 120 gaggagaggggatggaactggactagaagtcactagattgggtggatctatccagatgtc 179
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 321 gaggagaggggatggaactggactagaagtcactagattgggtggatctacccagatg-c 379

                                                                    
Query: 180 ttcgtgccctctggtgggcaggggggggttc-taagaatcagatattaaagcacttc 235
             |||     |||||||||| |||||| ||| |||||||||||| ||||||||||||
Sbjct: 380 --cgt-----ctggtgggcaagggggg-ttcctaagaatcagatgttaaagcacttc 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 636
Length adjustment: 9
Effective length of query: 226
Effective length of database: 627
Effective search space:   141702
Effective search space used:   141702
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)