Query= MSMg01no456_d08.b1 MSMg01no456_d08.b1 CHROMAT_FILE:
MSMg01no456_d08.b1 PHD_FILE: MSMg01no456_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:57 2005
(602 letters)
>mm_chr3_141444207_141445210
Length = 1004
Score = 1094 bits (566), Expect = 0.0
Identities = 597/616 (96%), Gaps = 14/616 (2%)
Strand = Plus / Minus
Query: 1 gattattattatatgcacttatgtgtgtgtgtataattattggtgcttaggcacctgagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 gattattattatatgcacttatgtgtgtgtgtataattattggtgcttaggcacctgagc 869
Query: 61 atatgtgtggaaagcaaggaacaacattcaggagaaagttctttctcccaccatcagact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 atatgtgtggaaagcaaggaacaacattcaggagaaagttctttctcccaccatcagact 809
Query: 121 gggt--------------atcagactgccctcatctgcaggctgccccttagatcctctt 166
|||| ||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 808 gggtatcagactcaggtcatcagactgccctcatctgcaggctgctccttaggtcctctt 749
Query: 167 gttggccctcatcctggagaacatttttcaagaaaggtacaaacaacttgaaaacgagat 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gttggccctcatcctggagaacatttttcaagaaaggtacaaacaacttgaaaacgagat 689
Query: 227 caggtctcttgagcaatttgtagaatgctcttttggcttcaaaagcatctcataattttc 286
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 688 caggtctcttgagcaatttgtagaatgctcttttggcttcaaaagcatttcataattttc 629
Query: 287 cagaccatcatttcaagagatcatgctgtctaactcttctagtcaaggaggctgagtctc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 cagaccatcatttcaagagatcatgctgtctaactcttctagtcaaggaggctgagtctc 569
Query: 347 aaaggctagaaatgatcattccaatagtatccaagtttaaattcaaacaaatgaaatggt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aaaggctagaaatgatcattccaatagtatccaagtttaaattcaaacaaatgaaatggt 509
Query: 407 tccagccattcttgtcaatcattttgatgtctcagttttaccttgtctaaccccaatggg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tccagccattcttgtcaatcattttgatgtctcagttttaccttgtctaaccccaatggg 449
Query: 467 tgtccatttcacatttgtgtcaatattttccaagtgttgtccaactgttatgaaaaccaa 526
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 448 tgtccatttcacatttgtgccaatattttccaagtgttatccaactgttatgaaaaccaa 389
Query: 527 ggcccatgtcttactatctttaaatggacagagacatttctttggttttaaatttcagta 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ggcccatgtcttactatctttaaatggacagagacatttctttggttttaaatttcagta 329
Query: 587 acaacatataatctct 602
||||||||||||||||
Sbjct: 328 acaacatataatctct 313
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1004
Length adjustment: 10
Effective length of query: 592
Effective length of database: 994
Effective search space: 588448
Effective search space used: 588448
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no456_d08.g1 MSMg01no456_d08.g1 CHROMAT_FILE:
MSMg01no456_d08.g1 PHD_FILE: MSMg01no456_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:57 2005
(437 letters)
>mm_chr3_141281873_141282710
Length = 838
Score = 770 bits (398), Expect = 0.0
Identities = 428/440 (97%), Gaps = 5/440 (1%)
Strand = Plus / Plus
Query: 1 ctctgctattgtgtgatttacccatacatagatcaggacttgcatgtagtccaatctcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 201 ctctgctattgtgtgatttacccatacatagatcaggacttgcatgtagtcgaatttcaa 260
Query: 61 ttgctaaatgagtcaatgtgaattaatctggaatgagcagttggaaggaggtaagtatta 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 ttgctaaatgagtcaatgtgaattaatctggaatgagcagttggatggaggtaagtatta 320
Query: 121 gtgaattaaactacaccttgctaaactggtagatgatttgcagtgtctgctcactagaat 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgaattaaactacactttgctaaactggtagatgatttgcagtgtctgctcactagaat 380
Query: 181 gttgcaagactaggctcacaatcagaggttggaagaggggcatattctcttggttgtaac 240
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 ggggcaagactaggctcacaatcagaggttggaagaggggcgtattctcttggttgtaac 440
Query: 241 tttggttcatg---attaggccaattccagttggcaccagtagagaggaccttctctgat 297
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttggttcatggaaa--aggccaattccagttggcaccagtagagaggaccttctctgat 498
Query: 298 attctgaagcgccagtggttggatggcacagataaatggtcttgatctttgtttcaattt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 attctgaagcgccagtggttggatggcacagataaatggtcttgatctttgtttcaattt 558
Query: 358 gcatatgctgagtgatgcaaatcccttccctttgggaggtcaaggggcatgtgatctaat 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gcatatgctgagtgatgcaaatcccttccctttgggaggtcaaggggcatgtgatctaat 618
Query: 418 gcaacagatgcatggctagc 437
||||||||||||||||||||
Sbjct: 619 gcaacagatgcatggctagc 638
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 838
Length adjustment: 9
Effective length of query: 428
Effective length of database: 829
Effective search space: 354812
Effective search space used: 354812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
