BAC Information

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BAC

Clone NameMSMg01-456O12
Chromosome3 (Build37)
Map Location 14,757,061 - 14,757,283
singlet/doubletsinglet
Overlap genenone
Upstream gene0710005M24Rik, EG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507
Downstream geneCar1, LOC100041785, Car3, Car2, EG634323, LOC100039985, LOC751864, Sirpb1, LOC668101, LOC100038947
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456O12.T7 (MSMg01no456_o12.b1)MSMg01-456O12.TJ (MSMg01no456_o12.g1)
ACCAG543098AG543099
length745795
length of high quality
(start - end)
238 (74 - 311)189 (131 - 319)
definitionCHROMAT_FILE: MSMg01no456_o12.b1 PHD_FILE: MSMg01no456_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:53 2005CHROMAT_FILE: MSMg01no456_o12.g1 PHD_FILE: MSMg01no456_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTAAAAATTGCGGCCGCTAAAGGAGTCACTTTCAAAATAGGATCCGNNG
GAATCCAAGTTTCTCATTCAGCAAAATAGACAAGAATCATACCAAAGGTA
ACTGGAGGCTATATTTGACTTATGTACACACACACACACACACACACACA
CACACACACACACACACACACAAATACTACCTAGTGGTTAATTATTTGTG
CTAATCCAGTTGCTTGAGACCTAATGCACCTGAGATGAACTTGTACCCAA
GGAGACAGCAGCAAGGGAGTAACTCATATAGTAAAGAGACACCATCAGAC
TAGCCTTACTTATATTCTGCCTCTACAGATTCCCTTTGGGGAAGCGGGGA
GGTACTGGGTCAATCTTTCCATTATAAGAATGTAGCTACTCTGTAATTCA
AAACACTTTATACAAATGTGCTCAGTTAAACAAAAGCAGCTTTGGTGAGG
TTAAAACTTCATATATATCAAAGAAACAAACTAAATACCAGAAACAGTTC
TCACTACACTCCGAATTAAGCACTTATAACATCCCTGCTCATCTACATAC
CCAGACTTCTTTATCAACCCAAATCCCTCTCAATATCTTTATTTTTCTGA
CATCTACACCGTCATCAGGTAAAGAATACATTTGTTTTTCTCAGTCCATT
ATTTTCTCATGGCCACCCATCCGGCTTCCAACTTGCCTTAAAACTCCTAA
TTTATGGCCACTGGATAATAATTTTTTTTCCTTACATTATCCCCN
TTTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGTACCTGAGG
NNGAACTATAGAAGGTTTCGAGAACCTCTNGGANNCNGATTCTGAGAATT
TTATTGAGTGTTTGTGCATTGTATACCCATAAGGGAAATTGGTCTGAAGT
TCTCTTTCTTTGTTAGTTTTGGTATCAGTGCAACTGTGGCTTCGTAGAGC
AAATTGGGTACTGTACCTTATAGTTTGAAGAGTATTCCTATTAGGTCTTT
TTTGTTTTTCTGATAGAATTCTGCACTAAACTCATCTGGTCCTGGGATTT
TTTTGATTGGGAGACTTTTTTCGTCCGTTTCCANNNCGCCAGGGGACATG
GGACCGCNTATTTCTCTTCTCTGATCCTGACTTATTTCTGGTACCTAGCA
TCTATCTATTATATTGGCCCCCTCCCTATTTTTTTTTTTGTCTTGCCGAT
GATTACTTTTCGCTTCTTTTACCTATCGCATCATCTTCTTTTTCTGTTGT
CTTTCTTTCCCCTCCCCTTTTAACTTCCCTTATTTCACCATTCCCTTCTC
TTTTTTCTTTTTTTTCCCCTTTACTCTCCCTTCTTCTCTTCTTCTCTCTC
TCTTTACCCGCCTTTTTCTTTTCCTTCCACACCTTCTTTTTCACCTCTAT
TTATTCCACGCCTTTTTTTTTCTTTTTTTTTTCTCTACCTTTTCCCCTCC
CTCTTTTTTTTCTCCTCTTTCCCTCTTTCTATTTCCACTTCTATTCCCTT
TCTCTCATTCCCTATTCCCTTCCATCTTTCATTTCCTCTCCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_o12.b1 MSMg01no456_o12.b1 CHROMAT_FILE:
MSMg01no456_o12.b1 PHD_FILE: MSMg01no456_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:53 2005
         (238 letters)



>mm_chr3_14756762_14757399
          Length = 638

 Score =  385 bits (199), Expect = e-111
 Identities = 221/237 (93%), Gaps = 14/237 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatagacaagaatcataccaaaggtaactggaggctatatttgacttatgtacacacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct: 522 aaatagacaagaatcataccaaaggtaactggaggctatatttgacttatgt-------- 471

                                                                       
Query: 61  acacacacacacacacacacacacacacacacacacacaaatactacctagtggttaatt 120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ------acacacacacacacacacacacacacacacacaaatactacctagtggttaatt 417

                                                                       
Query: 121 atttgtgctaatccagttgcttgagacctaatgcacctgagatgaacttgtacccaagga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 416 atttgtgctaatccagttgcttgagacctaatgcacctgagatgaacttggacccaagga 357

                                                                    
Query: 181 gacagcagcaagggagtaactcatatagtaaagagacaccatcagactagccttact 237
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gacagcagccagggagtaactcatatagtaaagagacaccatcagactagccttact 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)