BAC Information

Click to search

BAC

Clone NameMSMg01-456P01
Chromosome3 (Build37)
Map Location 43,392,605 - 43,392,773
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039219, LOC677788
Downstream geneLOC100039264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456P01.T7 (MSMg01no456_p01.b1)MSMg01-456P01.TJ (MSMg01no456_p01.g1)
ACCAG543124AG543125
length810804
length of high quality
(start - end)
254 (43 - 296)169 (73 - 241)
definitionCHROMAT_FILE: MSMg01no456_p01.b1 PHD_FILE: MSMg01no456_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:56 2005CHROMAT_FILE: MSMg01no456_p01.g1 PHD_FILE: MSMg01no456_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTATATGATTTTGGATATTATACCTCTGTCAGATATATTTATTCCTT
GACTTTTTCTTTCCACTTTGTATGCCCTTTATAAGTTTTTGGTCCCTGTT
GCTTTAGCTGGAAATTTAAGTACTATATTGAACAGATAAGGAAAGAGTGG
AAGCCTTTCTTGTCTTTTATTTTATGAAATTGATCTATGTTTCTCCCCAT
TTAATTTGATGTTGACTATTGGTTTGCCATAGGTTGCTTTTATTAAGCTT
TGTTATGCACCTTGATTTCTTGATATTTCTGATACATTTATCATGAATTG
ATATTGCATTTTTGTCCAATGCTTTTCACCTTGATTTATCTGATTCTTTT
CTTTTTTCTCTCCCCACTTCTGTTCATTTTCGTTATCCCTTGACTGTTCT
TTGTGCCTCCCGTTTCCCCGCCTCTTTTCTTTCGTCTTTCATCTCTATCT
TTTTCCCCTCTTGCCCTTCGCTTCTTTTCCCTTTTCCCTTTTCCCCCGTT
CTTTCAATTTTTTTCTGCTGTTTTTTTTTATTTTTCATTCATCGTCTTCC
CTCTTTTCTTTTAATTTCCCTTCTCTCCTCTTTTATCCCCCCCCTTCTTT
TTTCTCCCCTCCTTCTTTTTTTCCCCTACCTTCCCCTTTATTGTCCAGCT
CCTCTTCATTTTGCCACTTACTTTTCCCCCCCTTTCTTTTCTTCGCCTTG
TTTTTGTCTTATTATTTTCCTCCCTCTTCCTTCCTTTTCTCTTTCTGCCC
TTTCCTCTTG
CTACGATGCAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGTTTCAGAAATTCCTGTTATTCAGTAGGAAGAAGACAAG
TGAAGACAAAGAAGCTGATAATGCGATAACAAATCCTACCATAAGAATTA
TTGTTCAGGGGATTGAAGGAGAATGTTTGACCTGAAAAACTGAGAAGAAT
AAATCCCATAATGTTGACCTGGAATAGGAGGCCATATTGAGAAGCTGTAT
GCTCCTTCGTGACGATGTGCGCCATCATACGATAGCAAGCTACCTGAGAG
GCCTTATAATTCGCGCGGCGTTTTTTTCTGCAGAAGTCTATTCGGAGTGA
ATCAACGCTCATAACACACCAAACACGATCGATTACTTTATTGTTATAAG
TTATGACTACTATTTCTATTCATCCGCCTATCGCGATATATTTGTCGTTT
GCAATTTTCTTCCCTCTCCTTCCTCCTCTTTCTTCTCTTTCTTTTTCCTT
CCTTCCTCACTTTCCTCTCTTCTTTTCTTCTCTCTCTTTTTTTTCTCTCA
CCCTCTTTTTTTAACCCCTCTCTTTCGTTCCATTTTATCTTTGCATTTTC
TTCCCTCTTTCCTTTTCCATCTCTTTTTTCTCCTTTTTTTCCCTCCTTTT
CTTCTTCCCCTTTCTTCTTTCAATACTACCTCTTTCTTTCTTTTTTTTTA
TTTCCACTTTCTTCTTCTTCTTTCTCCCCCTTTCCTTCCTTCTTTATTTT
TCTTTATATCCTCCCTCCCCTTCTTTTTCTTCTCTTCCCTCTTTTTTTTT
TATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_p01.g1 MSMg01no456_p01.g1 CHROMAT_FILE:
MSMg01no456_p01.g1 PHD_FILE: MSMg01no456_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:57 2005
         (169 letters)



>mm_chr3_43392405_43392973
          Length = 569

 Score =  296 bits (153), Expect = 5e-85
 Identities = 165/169 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctgttattcagtaggaagaagacaagtgaagacaaagaagctgataatgcgataacaa 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 201 tcctgttattcagtaggaagaagacaagtgaagacaaagaagctgaaaatgtgataacaa 260

                                                                       
Query: 61  atcctaccataagaattattgttcaggggattgaaggagaatgtttgacctgaaaaactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcctaccataagaattattgttcaggggattgaaggagaatgtttgacctgaaaaactg 320

                                                            
Query: 121 agaagaataaatcccataatgttgacctggaataggaggccatattgag 169
           || |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggagaagaaatcccataatgttgacctggaataggaggccatattgag 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)