BAC Information

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BAC

Clone NameMSMg01-457G05
Chromosome3 (Build37)
Map Location 44,923,482 - 44,923,740
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484
Downstream geneLOC100039296, Pcdh10, LOC100039282, LOC433580, LOC671801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457G05.T7 (MSMg01no457_g05.b1)MSMg01-457G05.TJ (MSMg01no457_g05.g1)
ACCAG543467AG543468
length771827
length of high quality
(start - end)
275 (47 - 321)204 (80 - 283)
definitionCHROMAT_FILE: MSMg01no457_g05.b1 PHD_FILE: MSMg01no457_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:34 2005CHROMAT_FILE: MSMg01no457_g05.g1 PHD_FILE: MSMg01no457_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:34 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTCTATATTCTCCAGATACAACCAATGGGGTAAATTTGGCTTTC
AACCCTGATCATTTCCTGTAAGCTGCCAGCATAGGAAAAGGTAGTTAGTG
TCTGACTGATGCAGACTCAAATTAAGTGAATGTCCTGGCTGTCTATCAAT
ATGTCATCCCATTTGTCATTTCTACTTAACTCACCTCCAGTCCACTTGGA
AATATTCCCATTTTTCTTTTTTTTTTTTTTTTTAGGAGATAGTAATCTAC
AACTATATGGTGCATCCCGGGATCTGTAGCATATGCTTGTGGTCCAGGCA
TTGGGGTTGTTCTGGAGCTGGGGATGGAGGGTCGGTTCTGGTCTGTTCCG
GGACCAGCATTTTCCCCTCCCTTTTCAGTCTCTCCCTCTGCTTTCAACTG
CCACTGCCTGCTACTGCAGAGTCTCTTGGTTGTCTTGTCTCTTTCCTGTC
TGGCTACTTTTACTTACTGATTTGAAAATGTATATTTACACATAGTGTAT
TCGTAAGTATATGAAATTCACCTTGTGCTCTTTTCTTTTCCTTCTTCTCT
TTTTTTGGCGAGTAACGGTAAACTTTTTCTATTTGTATTCTTTTGCAACA
TCCCTTATCTTCTTTCCCCTCCCTCTTCTGCTTCACCAAAATTTTTTTTT
TCATTTTTTCTTAACTTCCCTTCCTCCTTTCCTTCAACTTACCTCTTTAT
CCCCTTCCATTTTTTATCAGG
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTA
ACATAAAGTAGTGTTGTACTTTGCTAAATGTTTTTTCAGCATCTAATGAG
ATGATCATGTGACTTTTTCTTTGAGTTTGTATATATAGTGGATTATGTTA
ATGGATTTTCCTGCATGTCTGGGATGAAGCTTTCTTGATAGTGGTGAATG
ATGGTTTTGATATGTTCTTGGATTGGGTTTGTGAAATTTTTATTGAAAAA
TTTTGCATTGTTACCCCTAACATTAACTGGTTTTTAGACCTACTCCCCCT
GTTGTTTTTTTTGTTTTTTTTTCTTCTCATATCTCTCTGTTCCTTTTTTT
CATGCAATCATGTTCTCCTTCTCCCCTCTTTTCATTTTTTTTCTCTTTCT
TCCTTAATTTTCTTTTATCTTCCTTTTTTTCTCGTTTCCTTTATTTCTCT
TTTCTTTTCCTAATTTTTTTCATTTTTACTATTTTTTTTTCTTTTCCTAT
CTATTTCTTATAAAATTCCTTTTTCCCATTTCCATCTTTTTTCCCTTTTT
AAACATTTATCTTCTTCACTTATTTTTAGCCCCTTCCTTTCTTTCTCTCT
TTTGTTTTTCTTTCTTTTTTTTACCTTTTTCCATTCTTTTTTTTTCTAAA
ATCCTTTCTTTCTTTTTTATGTTTCTTTCTTCTCCCGCATCATTTTTCTT
TCTTATTCCTTTTCTCTTTTTTTTTCCTTTCTTCATTTTTTCTTCTCTTT
TTACTTTTTCCCTCACCCCTTCTACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_g05.b1 MSMg01no457_g05.b1 CHROMAT_FILE:
MSMg01no457_g05.b1 PHD_FILE: MSMg01no457_g05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:34 2005
         (275 letters)



>mm_chr3_44923331_44924001
          Length = 671

 Score =  416 bits (215), Expect = e-121
 Identities = 252/271 (92%), Gaps = 12/271 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttctatattctccagatacaaccaatggggtaaatttggctttcaaccctgatc 64
           |||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gaattcttctatatactgtagatacaaccaatggggtaaatttggctttcaaccctgatc 351

                                                                       
Query: 65  atttcctgtaagctgccagcataggaaaaggtagttagtgtctgactgatgcagactcaa 124
           |||||||||||||||||||||||||||||||    ||||||||||||||||||| |||||
Sbjct: 350 atttcctgtaagctgccagcataggaaaagg----tagtgtctgactgatgcaggctcaa 295

                                                                       
Query: 125 attaagtgaatgtcctggctgtctatcaatatgtcatcccatttgtcatttctacttaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 attaagtgaatgtcctggctgtctatcaatatgtcatcccatttgtcatttctacttaac 235

                                                                       
Query: 185 tcacctccagtccacttggaaatattcccatttttctttttttttttttttttaggagat 244
           |||||||||||||||||||||||| |||||||||||||||||||         || ||||
Sbjct: 234 tcacctccagtccacttggaaatactcccatttttctttttttta--------agaagat 183

                                          
Query: 245 agtaatctacaactatatggtgcatcccggg 275
           |||||||||||||||||||||||||||||||
Sbjct: 182 agtaatctacaactatatggtgcatcccggg 152


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 671
Length adjustment: 9
Effective length of query: 266
Effective length of database: 662
Effective search space:   176092
Effective search space used:   176092
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)