Query= MSMg01no457_l20.b1 MSMg01no457_l20.b1 CHROMAT_FILE:
MSMg01no457_l20.b1 PHD_FILE: MSMg01no457_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:04 2005
(460 letters)
>mm_chr3_72492656_72493515
Length = 860
Score = 845 bits (437), Expect = 0.0
Identities = 455/461 (98%), Gaps = 2/461 (0%)
Strand = Plus / Plus
Query: 1 gcagtggttctaagtggcatctcattgtcatgcccatct-atgtacttactctttgaaca 59
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 201 gcagtggttctaagtggcatctcattgtcatgcccat-tcatgtacttactctttgaaca 259
Query: 60 caaagcagctccatcgaacactgaagagtctgctcaccacagtgtctttgcaggtgtttc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caaagcagctccatcgaacactgaagagtctgctcaccacagtgtctttgcaggtgtttc 319
Query: 120 cattgaaaactttgccgtttgcatgcaaatttcaataagattacaaacaatttcactcct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cattgaaaactttgccgtttgcatgcaaatttcaataagattacaaacaatttcactcct 379
Query: 180 tcaaatattattctccatcatatgtctgtaatcataaaaactatttgtcaaattctatca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcaaatattattctccatcatatgtctgtaatcataaaaactatttgtcaaattctatca 439
Query: 240 cctcattaaattctaaaatcattttaataatttcaaagtgaattccaaatctaatgttga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cctcattaaattctaaaatcattttaataatttcaaagtgaattccaaatctaatgttga 499
Query: 300 aaggtcatacaatttctgaatttctggatatactttgttctttcttatctcctaattttc 359
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 500 aaggtcatacaatttctgaatttctggatatactttgttcttacttatctcgtaattttc 559
Query: 360 acagttttattcaggtgtgaacagagctacatcagctcaactatcagttagctcattcaa 419
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 560 acagttttattcaggtgtgaacagagctacatcagcttaactatcagttagctcatttaa 619
Query: 420 aatcatccttccaattgtacttttaatatctcttgctggca 460
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aatcatccttccaattgtacttttaatatctcttgctggca 660
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space: 382500
Effective search space used: 382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no457_l20.g1 MSMg01no457_l20.g1 CHROMAT_FILE:
MSMg01no457_l20.g1 PHD_FILE: MSMg01no457_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:04 2005
(489 letters)
>mm_chr3_72652359_72653247
Length = 889
Score = 915 bits (473), Expect = 0.0
Identities = 485/489 (99%)
Strand = Plus / Minus
Query: 1 ctttcgttggcctgcttagtcaacattcttgtacatcctgctaagagttatacctctttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ctttcgttggcctgcttagtcaacattcttgtacatcctgctaagagttatacctctttc 467
Query: 61 attgatctgaccccatctatatacaagtccagagttctcaataattaagaatatttttgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 attgatctgaccccatctatatacaagtccagagttctcaataattaagaatatttttgc 407
Query: 121 tcttactgcggatctggattccactcccaatactcacattgtggattataaccatccata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tcttactgcggatctggattccactcccaatactcacattgtggattataaccatccata 347
Query: 181 aggacagttgtagtggatccattgtcctctgacctctgaatgcatgaggcatgcttgtgg 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 346 aggacagttgtagtggatccattgccctctgacctctgaatgcatgaggcatgcttgtgg 287
Query: 241 tactcatatgtgtgtaaaaacaaaacattcacacaaaatatttaaaattctgtagtatat 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tactcataagtgtgtaaaaacaaaacattcacacaaaatatttaaaattctgtagtatat 227
Query: 301 tagggaacatatttgataagaaattcttttattttatttttattttttaaattttatatt 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tagggaacatatatgataagaaattcttttattttatttttattttttaaattttatatt 167
Query: 361 ggatattttatttatttacatttcatctgttacctcctttgccgcttaccctcctcaaat 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 ggatattttatttatttacatttcatctgttacctcctttgccgcttaccctcctcaaac 107
Query: 421 cctttatcctatccctcctcaccttgcttctatgagggtgctccgccattcacccacaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 cctttatcctatccctcctcaccttgcttctatgagggtgctccgccattcacccacaca 47
Query: 481 ctcccacct 489
|||||||||
Sbjct: 46 ctcccacct 38
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
