BAC Information

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BAC

Clone NameMSMg01-457P10
Chromosome3 (Build37)
Map Location 29,723,868 - 29,724,107
singlet/doubletsinglet
Overlap geneLOC100040676
Upstream geneGm1527, 6130401L20Rik
Downstream geneEvi1, Mds1, LOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik, Samd7, Tloc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457P10.T7 (MSMg01no457_p10.b1)MSMg01-457P10.TJ (MSMg01no457_p10.g1)
ACCAG543904AG543905
length874768
length of high quality
(start - end)
201 (44 - 244)244 (79 - 322)
definitionCHROMAT_FILE: MSMg01no457_p10.b1 PHD_FILE: MSMg01no457_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:24 2005CHROMAT_FILE: MSMg01no457_p10.g1 PHD_FILE: MSMg01no457_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCTTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATC
CGCGGAATTCTATCATTTGACCCTCAGCCTATGAGTGTCTATGCCAATAA
TATGTTCTTATGTGACAAAACTTATCCTGGGAGACACTACATATATGTCT
TCTCATCCCAGCTAGGGAGCCCTTGAAAGGCTGAAGTATGGATACCACCA
GAATCCACCATAGGTGGATGTAGGGTTTTACTGGGGTTACACACAGGAGT
GTGGGTGACAAGTTATTTACAGTAGTAGGAATGACTCATATACAGTTGTA
TCTCTTCAGTCCACCCTTATGTTTTGTACCGTTCCTATTAATCTTGCTAA
TATGTATACATCTTTCAGCTATTCTGCTCATTTCTGTTACGTCCGCCTCA
CTTCCGATCGATTCATTGCTCCTTCTCCTATTATTTTTCCCCGTCTTCAA
CCTCTTTTCTCTTTTTCTTTCTTGTTCCTATTCCCCCTACTCTCCTTTTT
ATGCCTGCTTTCTCCAATTTCTCTTAGTCTTCTTGTTATTTCTACTTTCC
TCCCATTCCTTTATTTTCTGTACCTTCTTTCTCTTTCTCTCCCCTTTTTT
GTTCCTCTTCCCTATCTCCTCTTTCTTGTTCCTCTTTATACTCTTTCCTA
TTAGTTTTTTTTTTATGTCTTTTTCATACTTTTTTTGTATTTCTTTTACT
TTTTTCTACTTTCTCTTTTTCTCTTCTATTCTTATTTTTATTCCCTCTCC
TTTCTTTTCTCCTTTTTTTTATATCTCTGTTCCATTCTTTCCTATTCTTT
TTTCTTTTCTTCCTCTCCTTCTCTTACCCTTTTTTACTCCATTTCCCGAT
TTCCTCTACACCGACTTATTATCN
TTTCCCGATGATGTGGGAGGCCTGGCGGNCGCCTGTTTCAAGAATGTAGG
TGAACTATAGAAGTACCAGCAAAATTCGAAGTTTTTCTGAGCCTCAACAC
ATGTATCTCAAACTTTCTTTGAAACCTTAATTATCAGTGTTTGTGGGATA
AAGCTTAAATGAGACTGTCAGCTTGGTGGAGAATTAATATCTAATTAGAA
TTAATATCTAGAAAGAATACTGTCTAGATATAAAGTTTTTGTCTGAATAT
CCTCTTTTTACTATATTAAAATTAATTATTCAGAGGACATTTGTCCTAGA
AAGAAGGCTAGNTGCTTATTTTNGATANTTTAGNATTTGNTGCTCACAGA
TGATGATGTCTGTTATTGTGAGCTGGACAACCTTGAAAAAAGTAAAACAA
CTCTACATGGAGTTTATCACACAGAAATCTATCTTTTAGCTTGGAGACTG
TTTATAGATAATACTGGTTGTGATAGTGTTGTTGTTGTCCATTTTCCCCT
TCCTTTTCCATTGTCTTTTCCCTCCCTTTCTTTCTCTTCTATTTTTTTTT
TTTTTGTTTTCTTCCTCCCCCTTTTTTTTATCCTCTTTCCTGGTTCCTTT
TCCCTTTTTTCCCTTTTCCACGTTTGTTTATTTTGCCTTCTTCATCGCTT
TGTTCCCATCTTTTTTTTTTTTTTTTTTTTTCCTGCTACCACTATTCCAT
CATATATGTCCTCCGCCTTTTGCTCCTTTTTCTCGTTCTATGCTTGTTTG
ATTCTTCCGTTTTGTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_p10.g1 MSMg01no457_p10.g1 CHROMAT_FILE:
MSMg01no457_p10.g1 PHD_FILE: MSMg01no457_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:24 2005
         (244 letters)



>mm_chr3_29723668_29724311
          Length = 644

 Score =  397 bits (205), Expect = e-115
 Identities = 231/240 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtttttctgagcctcaacacatgtatctcaaactttctttgaaaccttaattatcagt 60
           ||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||
Sbjct: 440 aagtttttctgagcctcaacacatgtatctcaaaccttctttgaaaatttaattatcagt 381

                                                                       
Query: 61  gtttgtgggataaagcttaaatgagactgtcagcttggtggagaattaatatctaattag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtttgtgggataaagcttaaatgagactgtcagcttggtggagaattaatatctaattag 321

                                                                       
Query: 121 aattaatatctagaaagaatactgtctagatataaagtttttgtctgaatatcctctttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |  
Sbjct: 320 aattaatatctagaaagaatactgtctagatataaagtttttgtctgaagatcctcataa 261

                                                                       
Query: 181 tactatattaaaattaattattcagaggacatttgtcctagaaagaaggctagntgctta 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 260 aactatattaaaattaattattcagaggacatttgtcctagaaagaaggctagttgctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)