BAC Information

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BAC

Clone NameMSMg01-457P12
Chromosome3 (Build37)
Map Location 40,527,783 - 40,528,133
singlet/doubletsinglet
Overlap geneSlc25a31
Upstream geneLOC100041458, LOC100040882, Intu
Downstream geneHspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457P12.T7 (MSMg01no457_p12.b1)MSMg01-457P12.TJ (MSMg01no457_p12.g1)
ACCAG543908AG543909
length776870
length of high quality
(start - end)
351 (50 - 400)168 (83 - 250)
definitionCHROMAT_FILE: MSMg01no457_p12.b1 PHD_FILE: MSMg01no457_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:24 2005CHROMAT_FILE: MSMg01no457_p12.g1 PHD_FILE: MSMg01no457_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCCCAAGTGTTCCAAAGATTTAACTATGATTTAAACTCTTCA
TGTTTTATTTTCATTATCTTTTAACTGAAAAATATCTTTGTGTGTTCGTG
TTTATATAGTCTTGTGTGTGTGTGCTACTACTGTCTCACTCACACACACA
CACACATACACACACGAATTATTGTGAAGGTCGTAGGACAACCTCAGGTG
TCAGACCTTATTTTGTACCTTGCTTAACACAGGGTATCTGGTTTACCTGC
TAGTACCAGGTTAGCTGATCCTTATTCTTCCAGAAAACTCTAGTCCCCAT
CTCCCATCTCACTGTAGGAGCAATAGGACTACAGGTATGCCCTAAGACTT
CAGGCTTCACGTGGATTTGCCCGATCTGAAGTCAAGCCCTGAGCCCTCGT
CCCGTCATTATATCTGATGTTTGTTTTCTACACCTTTTATTAACTTATGC
TTTGTTACCTTATCCCTACTTTGTCGTTTTTTTGCCTCTTTTCCTTTCTC
CTTATTTTTCTATATTTCCCTTTCTTTTCCTTCTCATCTTCTTTCCTTTT
TTTTCTCTCTTTTCCTTGTTCTGCTTTCTTTTCTTCCTTTTTTTTCTCTT
TTCTTCTTCTTTTTCTTTTCTTTTATTTTCCCTCCTCTCTCATTCTTCCT
TTCTCTTTTTTTTTTTTCTCCTCCTCCCCTCAATTCTCTTATCCTCCTTC
CCATCTTTATCTCCTCCTCTTTATTT
NNNCCGCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCAGGAAAATGAATGC
CAGGATACAGCAGAACTAGTAGATAGAAGGTAAACGTTAAACAAATCCCC
TTGGAAAGATATACAGCATTTTTTGTTTGTTTGTTTGTTTGTTTGCTTGC
TTGTTTAGACAGGGTCTCACTATGTGTGTGGAGCTGCACTCACATTTGCC
ATTACATTTTGTTGCTGACAGCTGTGTTCTAATTAGCACATAATCTGCCC
ATGTGCAGGCCCAGTTCCCCTGTTTTTTTTTTTTTTTCAACACCGCGATG
AAAACTGCCCCCCATTTTTTTTTTTCCCCCTCTTCTTTTTTTCGTCCTCC
TTTTTTTCTTTTTTTTTTTTTCTTTTCCCCCCCCCCCTTCTGCTTTTTTT
TTTCCTTCCTTTTTTCCCTTCTTTCCTTTTATTCTCTTTTTCTTCTCTCC
CCCCTTCCTTTTTTCTCTTTTCTTCTTTTTCTTTTTCTTTCCTTTTTTTT
TTTACTTTCCCTCTTCTTTTTTTTCATCTTCTCCCTCTTTTTTTTTCCCC
TTTCCTTTTTTTATTCTTCTATTTCTTTTTTTATATTCCCCTTATATTTT
ACTCTCTTTTATTTTTTTCTTTTTTACTTCCTTTATTTTATTTTCTTTTT
TTTCTTTTTTATATTATTCTTACATTCTCTTTTTTTTCACTCCCACCTCT
CCTGTATTTCTTTTTTTTTTTTCATTTATTTCCTATCATATCACTCTTTT
TTTTTCACCCTTACTCTCTCTTTTCTTACCCCTTCTTCTTGTTTTTTTCC
CTTCTCCCTACTTTATCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_p12.b1 MSMg01no457_p12.b1 CHROMAT_FILE:
MSMg01no457_p12.b1 PHD_FILE: MSMg01no457_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:24 2005
         (351 letters)



>mm_chr3_40527583_40528333
          Length = 751

 Score =  629 bits (325), Expect = 0.0
 Identities = 343/351 (97%), Gaps = 4/351 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccccaagtgttccaaagatttaactatgatttaaactcttcatgttttattttca 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattccccaagtgtttcaaagatttaactatgatttaaactcttcatgttttattttca 260

                                                                       
Query: 65  ttatcttttaactgaaaaatatctttgtgtgttcgtgtttatatagtcttgtgtgtgtgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatcttttaactgaaaaatatctttgtgtgttcgtgtttatatagtcttgtgtgtgtgt 320

                                                                       
Query: 125 g----ctactactgtctcactcacacacacacacacatacacacacgaattattgtgaag 180
           |    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 gtgtgctactactgtctcactcacacacacacacacacacacacacgaattattgtgaag 380

                                                                       
Query: 181 gtcgtaggacaacctcaggtgtcagaccttattttgtaccttgcttaacacagggtatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcgtaggacaacctcaggtgtcagaccttattttgtaccttgcttaacacagggtatct 440

                                                                       
Query: 241 ggtttacctgctagtaccaggttagctgatccttattcttccagaaaactctagtcccca 300
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 441 ggtttacctgctagtaccaggttagctgatccttacgcttccagaaaactctagtcccca 500

                                                              
Query: 301 tctcccatctcactgtaggagcaataggactacaggtatgccctaagactt 351
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctcccatctcactgtaggagcaataggactacaggtatgccctaagactt 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)