BAC Information

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BAC

Clone NameMSMg01-458A10
Chromosome3 (Build37)
Map Location 63,450,774 - 63,451,052
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676984, LOC666967, Mme
Downstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458A10.T7 (MSMg01no458_a10.b1)MSMg01-458A10.TJ (MSMg01no458_a10.g1)
ACCAG543952AG543953
length736749
length of high quality
(start - end)
558 (81 - 638)279 (331 - 609)
definitionCHROMAT_FILE: MSMg01no458_a10.b1 PHD_FILE: MSMg01no458_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:29 2005CHROMAT_FILE: MSMg01no458_a10.g1 PHD_FILE: MSMg01no458_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGAAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAACA
GCGCGGAATTCCTTCCTATTTGCCAGAGATTATACCAACTAGTGTATCAT
CACCCACATAACAGTTGTACTACTATTAAAACAAAGAGCTTATGTTGCCT
GGTACGTAGGTGTACCTGATGTAGAGTGCAGAGCCAAATAAGACTATTGA
TTTTTTTTACCACCCTGCAAGCACCTTTCAACGCAATGAAAGCTAACCAG
CAGGGTGAAAGCCTCCACATTAGTTGCAACTTGATATCTCTGTCATTTTC
AACTAAGGTGTATTGGTGTCTTCACCATTTTGTTTTTATCAACTAGCTCT
GATGGGCATCCAAGAGCTTAGGTTTGTTTTGATTTCGGGGCCTCTCTGGC
TGATAGCTAATAAGGATGTATCCCTCATGTGGCACTGGAAGTTTTAATAA
CATGGCTTTTAGGAGCAACATTACCTAACCATGCAAAATATCTTCATTCT
CTGTCTCTGCCTATCTCTATATATATCTCTCAGTTTCCCTTTTCTTTTCT
TTCCTTCTCCCTTCTTCCCTCCCTTCCTCCCTCCTTCCCTCCCTCCCTCC
CTCTTTTTCTTTTCTTTCTCTTTTCTTACTTTGCAGNAAGTTTTTTTATA
TACCAGTTATTTAGGGTAGCCATCCATTAACCCCACACTCAACTCCTCTA
CGCCTACCACCTCTTCCCTGATTATACTTCACCCCT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAAACCGGGGNN
GAACTATAGAAGGTTTCAAACAACTCTAAAGTTCAAGATAATACCCTCAA
ATCATGAAACAATGATGTTTCTTTCCCAAGATCAAGAGTTAAACTACATC
GAACTTTGCAGCAGAAATAATAAAAGCTGAAGGCCATTTAATAGCTTTTT
GAAAGACAAGATGCTTTTGTCAACCTACAATTTTGTATGTAAGCAGAAAG
AATAATTTTGAAATAATCTAAGGTAAATACAAGTCAGAATTTACTGTCAG
TAAATTTTATTTCTGTGTTGATTTNATANATATGCAAAGATTCATGCAAA
ACATTATTTGTGAATTCCTTCTCCAACTTCCCATGAGAAATCAGTGAAGT
GGTATGAATTATCATTATACAGATAAGCAAAGAATGGCTAAACTAAAAAT
GAAGTTCCCACTATCTGCCCTTGAAGTCCTATTTTTAATAATGTCACTAT
CACTGCGTCTAGAATATAATGAGTCACCAAGCTGGTAAAAATATGTTTTT
GGGTTTTTAAATGATCTGAATATCTCAAAACTTTTGCAAGCTATCTTAAA
GTTTTTGTTGTAACTTAGTCAGAGGTTAGAGAACAAACATCTCTACCATA
GATATACCACTATATCTTGTCTCTCTGATCCCTCATTCTTCTACCATACT
TTAAAATTTTAACTGTGCCAGAGACTTTGTTGAGCTATATATTTATGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_a10.g1 MSMg01no458_a10.g1 CHROMAT_FILE:
MSMg01no458_a10.g1 PHD_FILE: MSMg01no458_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:29 2005
         (279 letters)



>mm_chr3_63450574_63451252
          Length = 679

 Score =  524 bits (271), Expect = e-153
 Identities = 277/279 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgcaaagattcatgcaaaacattatttgtgaattccttctccaacttcccatgagaaa 60
           |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 479 tatgcaaagattcatgcaaaacattatttgtgaattccttttctaacttcccatgagaaa 420

                                                                       
Query: 61  tcagtgaagtggtatgaattatcattatacagataagcaaagaatggctaaactaaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tcagtgaagtggtatgaattatcattatacagataagcaaagaatggctaaactaaaaat 360

                                                                       
Query: 121 gaagttcccactatctgcccttgaagtcctatttttaataatgtcactatcactgcgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gaagttcccactatctgcccttgaagtcctatttttaataatgtcactatcactgcgtct 300

                                                                       
Query: 181 agaatataatgagtcaccaagctggtaaaaatatgtttttgggtttttaaatgatctgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 agaatataatgagtcaccaagctggtaaaaatatgtttttgggtttttaaatgatctgaa 240

                                                  
Query: 241 tatctcaaaacttttgcaagctatcttaaagtttttgtt 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tatctcaaaacttttgcaagctatcttaaagtttttgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)