BAC Information

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BAC

Clone NameMSMg01-459P10
Chromosome3 (Build37)
Map Location 64,081,138 - 64,081,309
singlet/doubletsinglet
Overlap gene4930518C23Rik, EG637004
Upstream geneMme, Plch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, LOC380739
Downstream geneEG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110, Kcnab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459P10.T7 (MSMg01no459_p10.b1)MSMg01-459P10.TJ (MSMg01no459_p10.g1)
ACCAG545432AG545433
length795667
length of high quality
(start - end)
---175 (91 - 265)
definitionCHROMAT_FILE: MSMg01no459_p10.b1 PHD_FILE: MSMg01no459_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:04 2005CHROMAT_FILE: MSMg01no459_p10.g1 PHD_FILE: MSMg01no459_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGCGGCGCTATACAATCACTTCCGAAGAGATCCGCGGATTCGAGGTC
CGGGGGGGGGTGAGGAGGGGAGCGAGGGCAANCANTACCCACATCAANTA
AATGAAGAAANCTGNNAACATCCCCTAAAATCAAGAACTAAAAAAGTTGG
CCACTTCCCCCTACCTTTTCAAATAAAACTGGAATATTACCCAAACATTT
CAAAACAAAGGAAACACGGGGAACCAATTGGAAAAAAAAACCAAAAACCC
CGTTCCCAAGAATAAANAATATTAAGGCCCTCTAAATTCTCCAAAAACCC
CCACCCCCAAAAAACTCTTTTTAAAAAACGGGTGAAAAAAAAAAAAAAAA
AAAAAGGGGTCTTTCTCCCAAAAAAAAAAATCCCAAAAAAAAAAAATAAA
AAACCCCCCCCCCAAAAAAAAAAAAAAAAAAAAAAACACCCCCCGTTTTT
ATCTAGGGGGGAAAAAACATTTAGAAAAAAACCCCCCCCCCCTCTAAAAA
AAAAAAATAANTCTCCCACAAAAAAAAAACCCCCCCCCCCCCCCTCTATA
TACCCCNAACCAATATAAAAAAATAATTTTTTTTCACAAAAAAAAAAAAA
AANACCCCCACCACATACCCACTTCCCTTTCTTATATTNAAAAAAAAACC
AATTTTCCCCCTATATTTTATAAANAAAAAAAACACCACCTTACCTTCCT
CATTACCACCACCCCCCCTTCTCCCCCCACCCCCCCATAACACCTTTTNA
CCATTAATTTATTCTTCCCATACATTTAAATAAATATAGAGAGTG
TTCTCTTCCNNNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAGATTTT
ATGGAAGGCAGGCCTCATCACAGCTGCAGGTTGGATGAGCTCCATGAAGG
CCACACTTAAGATAAGTTTCAAGTTACCCACCTTTCCTTATATTGCTTTT
CCTAGTAATTTCCTTCCTATTCTTCACATTTACTTCTGTGTCTCTCAAAA
TAAATACTGTATGTTTGAGGTTGTGGGCCATTAATTTCACATTAGTCTCC
AAAGAGTTAGTTCTGGATTTATCCTGTTTATCCCAAAGAAAAGGAATAAA
AAAAAGAAAGGACCTCGGTCGGGGGTGGCCCCCGCCTTTTATCCCCCACA
CTCCGGGAAGGGAAAAGAGGCGGCCCATTTTTTTGGGTTTCAAAGGGCCC
CCCTGTTTCTAAAAAATGGGGTCCCCCGAAAAGCCCCGGGGTTTTTAACA
AAAAAATCTCCGGGTTTTTCTTAAAAACTTTAAATATCTTATCTTATTCC
CTCCCCCCGCGTATATATTATCTTTTACTCTTTTCGTTTCCCCCTCCTAT
TATACAATATGTTCGGTGCGGGTGTCTGGGCGCTTCTTGCGTTCTTAATC
ACCCTTCTACTTATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_p10.g1 MSMg01no459_p10.g1 CHROMAT_FILE:
MSMg01no459_p10.g1 PHD_FILE: MSMg01no459_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:04 2005
         (175 letters)



>mm_chr3_64080938_64081513
          Length = 576

 Score =  325 bits (168), Expect = 1e-93
 Identities = 171/172 (99%), Gaps = 1/172 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attagattttatggaaggcaggcctcatcacagctgcaggttggatgagctccatgaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attagattttatggaaggcaggcctcatcacagctgcaggttggatgagctccatgaagg 260

                                                                       
Query: 61  ccacacttaagataagtttcaagttacccacctttccttatattgcttttcctagtaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacacttaagataagtttcaagttacccacctttccttatattgcttttcctagtaatt 320

                                                               
Query: 121 tccttcctattcttcacatttacttctgtgtctctcaaaa-taaatactgta 171
           |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 tccttcctattcttcacatttacttctgtgtctctcaaaaataaatactgta 372


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 576
Length adjustment: 8
Effective length of query: 167
Effective length of database: 568
Effective search space:    94856
Effective search space used:    94856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)