BAC Information

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BAC

Clone NameMSMg01-461F13
Chromosome3 (Build37)
Map Location 30,769,016 - 30,769,319
singlet/doubletsinglet
Overlap geneGpr160
Upstream geneLOC100040676, Evi1, Mds1, LOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik, Samd7, Tloc1
Downstream genePhc3, LOC100040809, Prkci, Skil, Cldn11, Slc7a14, LOC625125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461F13.T7 (MSMg01no461_f13.b1)MSMg01-461F13.TJ (MSMg01no461_f13.g1)
ACCAG546491AG546492
length780781
length of high quality
(start - end)
192 (116 - 307)320 (71 - 390)
definitionCHROMAT_FILE: MSMg01no461_f13.b1 PHD_FILE: MSMg01no461_f13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:55 2005CHROMAT_FILE: MSMg01no461_f13.g1 PHD_FILE: MSMg01no461_f13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATATTTGCGGCGCCAAAGGAAGACCAAATCATCACCGGCGCGGAANCNC
AAAATTTCCCAAACATATCGGGGGCTGGNGAGATGGCTCAGGGGGTAAGA
GCACCCGATAGCTCCTCCGAAGGTCAGGAGTTCAAATCCCAGCAACCACA
TGGTAGCTCACAACCATCCGATCACAAGATCTGACTCCCTCTTCTGGAGT
GTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATCTTTAAAA
AAAAAAAACCAGTATATTCCAAAACCTCCCAATCAATGCACAAACTAAAC
TTTTAAGCTCATAAGTTGGAAAGTTTAGAAAAACATCAAGGTTGACACAA
AAACATAAGGGTTGCTTCTCAGCCGTGTATGTGTGAAGCGATGGGCCCAA
TCTTCTTCAACATGAGTAAAAATCAAACCATACAGTATTACTGAGTCAGA
CCATTCTCAAATACAGCTCCTGCGGTACACGGGAACATCTGTGTTAGTGG
AAAACTTAGTGATAACAAAAATAATAAACTAGGTTTGCTTTAATTTTCCC
CAGGGTCTCCTTGGTGTATTCTCTAGGTCCTAGGAGAACCCCTTCCCTCC
CCCCTCTTAATATATTCACTTAATGTTGGGCGCCTAAGATCTTTCTTTTA
TCTGTTCCATTGCCGGGGGTCCCTCCAACACCTCCCCAACATCCCTACAA
CTCACGATTCTCTCCAAAATTCCCTTTTATTCTTTCTGGATTCTTTTATC
CTCCTCTCCTTTACATGTACCTCGCCTTTN
TGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTACAAAGATACTGTCACCCCTGCCTGTAAATGGCCCTGTTCTA
AATGGCTTTGTCTTCTGTCACTGAACACTATGTGACAGTGTTTTCCTGTT
TGTCCACTTTCCCCCAGAACATGTATCTCATGGATTCAGGGGGTAGCCAT
CTACTGACTGTGTCATAGTTCATTGACTGACTCCTATTGTTATCATGTTG
TTTTGATTCTTTGCAGGGAGGGTATTTTATGGCTGTTGGAAATACACCAG
AATGAATGTTTTTCTTTTATCACAAAGAGGTTCCTTCCTTACTTCCTTTT
ATTTAATTCTTGAAATGCTGCTATGCTTTAATACGTGCCCCATGTGTGCA
CAATGCCCCACACTACCCTAGGCCTGTGTGACGTGGTCTATGGCATATGG
TACATGTTATCTTACGTTTTCCCTTTTATCGTGTCTCCCGAATTGTTTCT
CTTCTTCTTCTACACTATTTTCATACTTTCCATTTTTCCTATTATCTCTT
TTGTTTCCTTTTTTTCTATCCTTTTTCCCTTCTTACTTTTTCACCGCCCT
TTTTATCTCCCTTTCATAGCCTCCTCATATATTCTTCTTTATACACACTT
TTTCTTTTCCTTTTACTCCGCTTTTTCTTTTTTTTCCTCCCCCTCTTATT
TTATTCCCTTTCCCTCTTTTCTTTTCTCCTCTTTCTTCCTCTTCTTTCAT
TGTTCCTTACTCCCCTTCTATTTTTCAATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_f13.g1 MSMg01no461_f13.g1 CHROMAT_FILE:
MSMg01no461_f13.g1 PHD_FILE: MSMg01no461_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:55 2005
         (320 letters)



>mm_chr3_30768816_30769535
          Length = 720

 Score =  503 bits (260), Expect = e-147
 Identities = 293/304 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacccctgcctgtaaatggccctgttctaaatggctttgtcttctgtcactgaacacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacccctgcctgtaaatggccctgttctaaatggctttgtcttctgtcactgaacacta 260

                                                                       
Query: 61  tgtgacagtgttttcctgtttgtccactttcccccagaacatgtatctcatggattcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 tgtgacagtgttttcctgtttgtccactttcccccagaacatgtatctcatagattcagg 320

                                                                       
Query: 121 gggtagccatctactgactgtgtcatagttcattgactgactcctattgttatcatgttg 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 gagtagccatctactgactgtgtcatagttcattgactgactcctattgttatcaggttg 380

                                                                       
Query: 181 ttttgattctttgcagggagggtattttatggctgttggaaatacaccagaatgaatgtt 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||  
Sbjct: 381 ttttgattctttgcagggagggtgttttatggctgttggaaatacaccagaatgagtggg 440

                                                                       
Query: 241 tttcttttatcacaaagaggttccttccttacttccttttatttaattcttgaaatgctg 300
           |  | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 tcacatttatcacaaagaggttccttccttacttccttttagttaattcttgaaatgctg 500

               
Query: 301 ctat 304
           ||||
Sbjct: 501 ctat 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)