BAC Information

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BAC

Clone NameMSMg01-461I18
Chromosome3 (Build37)
Map Location 118,671,690 - 118,672,078
singlet/doubletsinglet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461I18.T7 (MSMg01no461_i18.b1)MSMg01-461I18.TJ (MSMg01no461_i18.g1)
ACCAG546644AG546645
length739750
length of high quality
(start - end)		492 (47 - 538)406 (77 - 482)
definitionCHROMAT_FILE: MSMg01no461_i18.b1 PHD_FILE: MSMg01no461_i18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:11 2005CHROMAT_FILE: MSMg01no461_i18.g1 PHD_FILE: MSMg01no461_i18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGAACTTACTTCTTCTATGTAACCAATTAGAATATCTACTAAC
TGAACTTTTCTATTCCTTCCCTGCCCCCACCCCACCCCCAGTTTTTTTCT
ACTCAGATTCTGATAGCCACCACTCTACTCTGTACTTTCATGTAAACTAA
CGTTGTTTCAATTCAGCATGTAAATGAGATCATTGACTATTGTCTGTTTT
TATTCTTGTTTCATTTCATTAAAAACTATGTCCACTTGTGGTTGCAAATG
GCAGGAGTATCATTTTTCTATAGTGGATATGTTACCCTTGTGTGAATATG
CCATACATTAGTTATTCATTCACCTGATTGGACACTTAGATTTTTTTCCC
ATCTCTTGCTTGTTGTGAATAGCACTTTAGTTAACACAGCAGTGTATAGG
CCCATCACTGCACTGATTTCACATACATACTTAGATAGATATGAATTATT
GAGATTGCTGGGAAATATGGAAGTGCCACACTTTACATTTTTAAGGGCTA
CCACACTGTTCTCCACATTGACTATACTAACTCCTGTCACACCACAGTAA
AAAAGGCTTTTCTCTTCTTTAAATCCCTTTCAAAACCTTGTTTTATGTAC
TACTTAAATTTGGCGGAGGGGGGGGGGCCACCCTTCCCCCCGTGTTTTTT
TTAAAATTGTGCCAAAAAGACATCTCAATTTTTTGCTTT

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCTTTTTTAAATTCATGAAAGCT
AAGTTGAATGTGGTTTCAAAAATGATAAAAGTGGGTTACTAAAATTTCAT
AAAATTACTCTTTAGTTGGTTGCTGTTTCAACAAGTAAAATGGCTACAGG
TTAACTATGTAAAAATTCCAAATTCCTTTGATTGATTTAGAAGATTTTGT
TATTTGTTATGTTTCTCATATTAGAAAACATAAATTGTAGATAATAGGTT
ATGAATAATTTTAGACAAATGTCATAATAGAACAACAACTGTAAATATAT
TACAAAGTACTGGCCCTAAATTAAAGAAAAAAAACCAATTTATAAAACCA
AGAGAGACAGAGAGACAGAGAGACAAAGAGATAGAGAGACAGAGAGACAG
AGAGAGAGAGAGAGAGAGAGAGAGATTTGGGTTGGAGAGATTGANNTGTN
NTTNNNANNNNNGNNNNNTTTGNNTGNTNTTTTTTTTGNNTTTTTTTTTN
TTTTTTTGGTTNGGGTTTTTGTTGTTTTGTTTTGTGNGTTTTTTTTGGTT
TNTNTGGTGTTGTGTTTGTTTTTTTTTTTGTGGTTTTGGTTTTTTTTTTG
GGGTTGTTTTTTGTTTTTGTTGGTTNGGTTTTTTTTGGTGTGGTGTTTTT
GTGTTGTTTTTTGTTTTTTTTTTGTGGTTTTTTTTTTTTTTTTTGTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_i18.g1 MSMg01no461_i18.g1 CHROMAT_FILE:
MSMg01no461_i18.g1 PHD_FILE: MSMg01no461_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:11 2005
         (406 letters)



>mm_chr3_118671555_118672360
          Length = 806

 Score =  729 bits (377), Expect = 0.0
 Identities = 386/389 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcttttttaaattcatgaaagctaagttgaatgtggtttcaaaaatgataaaagtgggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ttcttttttaaattcatgaaagctaagttgaatgtggtttcaaaaatgataaaagtgggt 465

                                                                       
Query: 61  tactaaaatttcataaaattactctttagttggttgctgtttcaacaagtaaaatggcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tactaaaatttcataaaattactctttagttggttgctgtttcaacaagtaaaatggcta 405

                                                                       
Query: 121 caggttaactatgtaaaaattccaaattcctttgattgatttagaagattttgttatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 caggttaactatgtaaaaattccaaattcctttgattgatttagaagattttgttatttg 345

                                                                       
Query: 181 ttatgtttctcatattagaaaacataaattgtagataataggttatgaataattttagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ttatgtttctcatattagaaaacataaattgtagataataggttatgaataattttagac 285

                                                                       
Query: 241 aaatgtcataatagaacaacaactgtaaatatattacaaagtactggccctaaattaaag 300
           |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 284 aaatttcataatagaacaacaactgtaaatttattacaaagtactggccctaaattaaag 225

                                                                       
Query: 301 aaaaaaaaccaatttataaaaccaagagagacagagagacagagagacaaagagatagag 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 aaaaaaaaacaatttataaaaccaagagagacagagagacagagagacaaagagatagag 165

                                        
Query: 361 agacagagagacagagagagagagagaga 389
           |||||||||||||||||||||||||||||
Sbjct: 164 agacagagagacagagagagagagagaga 136


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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