BAC Information

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BAC

Clone NameMSMg01-461K06
Chromosome3 (Build37)
Map Location 122,890,835 - 122,891,074
singlet/doubletsinglet
Overlap geneSynpo2
Upstream geneLOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2
Downstream geneSec24d, G430022H21Rik, Prss12, EG668804, Ndst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461K06.T7 (MSMg01no461_k06.b1)MSMg01-461K06.TJ (MSMg01no461_k06.g1)
ACCAG546716AG546717
length736758
length of high quality
(start - end)
240 (74 - 313)434 (78 - 511)
definitionCHROMAT_FILE: MSMg01no461_k06.b1 PHD_FILE: MSMg01no461_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:19 2005CHROMAT_FILE: MSMg01no461_k06.g1 PHD_FILE: MSMg01no461_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGATCTATATTTGCGGCCGCTAAACGAANCACAAATCCGACCCAGGGCGG
NAATCTGNCGCTTGCAACAACTGTGGGGAAGCCTGTTGGTCAGATTTCCT
TTAGGGCATGCTTCTCTTTTCACTCCTGGGAGGCTGTCACTGATACACTC
ACAGTAAAGATAGAGCTGTGCGTTCAGATTACAGAGCGGATCTGAACACG
GCATCCTCACGGACGCCTGTTCTTCTGTTTCCCTAAGAATTCCCTTTATT
TTATAATGAGCTCCACATATGGAACTTGACACTTCCAAATTATTTAGAAT
CTCAAAAATTAAGCTCNGTGCTTCCAGAGGGGACAGTCCTATGTGAAGGG
CTAGATAGTTAACAAATTCAAAACACATATTGCGTACACACTGTGGCTGT
GGAGACTTGAAGTATCTGCGTCCGGCTTCTTCTGTAGATGTGCTGTTAAA
GTTACTCCTCACAGGTGTGAGTTTCCTCTTCCTCAACCTTCTGCTCAACA
ATAGGAAGCTACCATCCGAGGTCAGCAGCACCAGGTCCTGTGTTAGCATC
ATTTATCCCGAGGTGATCCTTACTTCCCACTTAGTGTTCCTGTATTGCGT
ACGATATCCTCTATCTCTAAATTTTCCAACACCATGAACTCTTTTTTTAT
TTTTATCCCTTGCATAACTCCCCTCATTCACCCCCCTTTTTCCCTCTGTT
TTATCCCCTCTCCACCTCCCTCCTTTTGTTTCCCAC
TTCCGATGAATTGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACATAAAACCAGAGACACTGAA
ACTTATAGAGGAGAAAGTGGGGGAAAGCCTCGAAGATATGGGCACAGGAG
AAAAATTCCTGAACAGAACATCAATGGCTTGTGCTGTAAGATCAAGAATC
GACAAATGGGACCTCATAGAATTGCAAAGCTTCTCTAAGACAAAAGACAC
TGTCAGTAAGACAAAAAGGCCACCAACAAATTGGGAAAGGATCTTTACCA
ATCCTAAATGCGATAGGGGACTTTTATCTAATATATACAAAGAACTCAAG
AAACTGGACTCCAGAAAGCATTCTTACCCCAGTGTCACAGCGGCTTTAGA
TCCTGTGCCTTGTCTCCATGCTGGGCTGCAGCATGGTCCCTCGGTCCTTG
TGTCCCTCAGTCCTTGTGCTTCTCCACTGAGGCCACATTTGCTTTCACCC
CCTTTCTCTTAATGGCAAACTCCTTTCAAATAACCAGCTTTCCACAGATG
CCTCCGTCACTCCTAGATTTTTCGCACCCTTACCTTCTTGCGTATCCTCC
CATTCATCCTGAACGTCCCACTTAGTCGGTTATTTTCCATGCTCCTTTTT
CTAATTCTCTTTTTTAATAATCTTTGCCCGCCCCCATTTTTTTTCTCGGC
CCCTCTTCTCACACCCTCATTTTCCTCCCATTGCTCTTATCTTTTTTCCC
ATCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_k06.b1 MSMg01no461_k06.b1 CHROMAT_FILE:
MSMg01no461_k06.b1 PHD_FILE: MSMg01no461_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:19 2005
         (240 letters)



>mm_chr3_122890635_122891274
          Length = 640

 Score =  371 bits (192), Expect = e-107
 Identities = 228/240 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggggaagcctgttggtcagatttcctttagggcatgcttctcttttcactcctgggagg 60
           |||||||| ||||||||||||||||||||||||| |||||| | ||||| ||||||||||
Sbjct: 201 tggggaagtctgttggtcagatttcctttagggcttgcttcacatttcaatcctgggagg 260

                                                                       
Query: 61  ctgtcactgatacactcacagtaaagatagagctgtgcgttcagattacagagcggatct 120
           ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 261 ctgtcactgatacactcacagtaaagagagagctgtgtgttcagattacagagcggatct 320

                                                                       
Query: 121 gaacacggcatcctcacggacgcctgttcttctgtttccctaagaattccctttatttta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||
Sbjct: 321 gaacacggcatcctcacggacgcctgttcttctgtttccctaagaattccctttaaaata 380

                                                                       
Query: 181 taatgagctccacatatggaacttgacacttccaaattatttagaatctcaaaaattaag 240
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatgagctccgcatatggaacttgacacttccaaattatttagaatctcaaaaattaag 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)