Query= MSMg01no461_l21.b1 MSMg01no461_l21.b1 CHROMAT_FILE:
MSMg01no461_l21.b1 PHD_FILE: MSMg01no461_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:27 2005
(449 letters)
>mm_chr3_85410305_85411154
Length = 850
Score = 795 bits (411), Expect = 0.0
Identities = 440/455 (96%), Gaps = 11/455 (2%)
Strand = Plus / Plus
Query: 1 gaattctctactttccctt-atcactcatgctgctgttttgtctacagaatgtaaatgaa 59
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattctctactttccatttatcactcatgctgctgttttgtctacagaatgtaaatgaa 260
Query: 60 atgtgagcaggttggatggttagccattaatgcactaagcattgattctgtatcatgtat 119
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtgagcaggttggatggttagtcattaatgcactaagcattgattctgtatcatgtat 320
Query: 120 ttaccacccacaaacctatgaaataatcaacaggccacttgttagctgaggaagagtccc 179
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaccgcccacaaacctatgaaataatcaacaggccacttgttagctgaggaagagtccc 380
Query: 180 atctgggttctaatgaagagggaagtcataatggcaagaccacctgggctgagggagagt 239
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctgggtcctaatgaagagggaagtcataatggcaagaccacctgggctgagggagagt 440
Query: 240 ccccttcaggttctagtgaggacagacagaattttt-----aaggcaagaccatctgagc 294
||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 ccccttcaggttctagtgaggacagacagaa-----gccacaaggcaagaccatctgagc 495
Query: 295 tgaggtagagtcccctctgggtccttacaagagggaagccacagtggcaagagcttaaga 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tgaggtagagtcccctctgggtccttacaagagggaagccacagtggcaagagcttaaga 555
Query: 355 gtcagtagctgcagcgggtcattagatgtcatttgttgtgacactgctgtacttcaacac 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gtcagtagctgcagcgggtcattagatgtcatttgttgtgacactgctgtacttcaacac 615
Query: 415 atacctgcagctttgcttccagtacagcagccaag 449
|||||||||||||||||||||||||||||||||||
Sbjct: 616 atacctgcagctttgcttccagtacagcagccaag 650
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 850
Length adjustment: 10
Effective length of query: 439
Effective length of database: 840
Effective search space: 368760
Effective search space used: 368760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no461_l21.g1 MSMg01no461_l21.g1 CHROMAT_FILE:
MSMg01no461_l21.g1 PHD_FILE: MSMg01no461_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:27 2005
(479 letters)
>mm_chr3_85606200_85607075
Length = 876
Score = 872 bits (451), Expect = 0.0
Identities = 471/479 (98%), Gaps = 3/479 (0%)
Strand = Plus / Minus
Query: 1 caaatctgaggataatttgtctgaagagaaaacaaataaaaggtgtctatgttggtagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 caaatctgaggataatttgtctgaagagaaaacaaataaaaggtgtctatgttggtagag 617
Query: 61 gagaggcaagagaaagttaaagaccaaggggacactttcaagtctcccttcagtgccctg 120
||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 616 gagaggcaagagaaagtgaaagaccaaggcgacactttcaagtct---ttcagtgccctg 560
Query: 121 tttatgtgcttgggtcccaggcctgctctttgcctgtttccttcctgagagcaagaatcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tttatgtgcttgggtcccaggcctgctctttgcctgtttccttcctgagagcaagaatcc 500
Query: 181 tggtacctagtctgtctgtgagactagatactgatcaatacttccttctctgtacaaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tggtacctagtctgtctgtgagactagatactgatcaatacttccttctctgtacaaaac 440
Query: 241 ttgatcctgtggcttgcctaagtgatctaaattctctcccaaactagatgtgctcagtac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttgatcctgtggcttgcctaagtgatctaaattctctcccaaactagatgtgctcagtac 380
Query: 301 aagtccagccctcggaccactatagatgctggttcttcacctgtgcttttctgcaatgtc 360
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 379 aagtccagcccttggaccactatagatgctggttcttcgcctgtgcttttctgcaatgtc 320
Query: 361 ctaactctgacttgataaaggaagaacaatttctgatggccagtgtcctgtgcatgctcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctaactctgacttgataaaggaagaacaatttctgatggccagtgtcctgtgcatgctcc 260
Query: 421 atagaatgtcactctgaattccttccattttctacaaatcctcattttcttcattctga 479
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atagaatgtcactccgaattccttccattttctacaaatcctcattttcttcattctga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 876
Length adjustment: 10
Effective length of query: 469
Effective length of database: 866
Effective search space: 406154
Effective search space used: 406154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
