BAC Information

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BAC

Clone NameMSMg01-461N23
Chromosome3 (Build37)
Map Location 26,577,698 - 26,578,036
singlet/doubletsinglet
Overlap geneSpata16
Upstream geneNlgn1, LOC621017, LOC229152
Downstream geneLOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461N23.T7 (MSMg01no461_n23.b1)MSMg01-461N23.TJ (MSMg01no461_n23.g1)
ACCAG546893AG546894
length795790
length of high quality
(start - end)
339 (76 - 414)416 (78 - 493)
definitionCHROMAT_FILE: MSMg01no461_n23.b1 PHD_FILE: MSMg01no461_n23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:38 2005CHROMAT_FILE: MSMg01no461_n23.g1 PHD_FILE: MSMg01no461_n23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTTCTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCG
CGGAATTCAGAAGATGTTCCACATTCCAGGAGTGGTCACTGGGGCATTTC
TGGATACATATGCCACGAGTAGTGATCACATCAAAATGACTGGCATGTGA
CCTGGATTGCCCCTTGGTTTTATTTTGATGCATGGCTTCATTAATGTAGC
CCAGTCTTGTCTCAGACTTTTGATCCTCATGTGGCTAAAGTACTGAGATG
ACAGGTTTAGACCCCCATACTTATCTCTGAGTGTTTAAAAAATAGTTTTA
GGATGTTTATATATCTACCAATTTTTTATTAAAAAGTTTGATATGAGTTA
TACCTATTGTAAGTGATTAAAAGGAGAAGAAATTATGGTCATCTAGGATA
GTGGGTTTTCAACCTGTAGTTGTTCAATCAATACTTTACTCATGGAGCTA
AAACAATCAGCGTATAAGGTCCGTCCATTGTGTGGATCCTCCACATTTCC
TTCAGAATCTCTGATATCAGTCCTCAACCTTTTATAATAATTCCCCCGTC
TCATATTTTATTTTATAACAATTATGCTTTTTGGGCTTATCCCTAGGTAC
GTGTGAACCTCCTCCCCCCTTCTTACAGGTCAAAATATCTCTCACTGACC
AATCATTCTTCAAATCCCCCCCTCTCCCTTCTTTTTTCCTTCCCCCTTCC
CGTTTTTAAAATTAAAAATCTATTCTTCTCTCTTTTTTAATTATTTCACT
CTTAATCTTTTCTCTCTTTTTCTCTTTCCATTTCTATACCTTTAG
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCCGAGGAATACCGAATGGC
AGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCAGAATATTGGACATAGTACTACTGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATTAATACAGAAA
ATGTGGTACATCTACACAATGTAGTACTACTCCGCTATTATAAAGAATGA
ATTTATGAAATTTCCTAGCCAAAAGGAATGGACCTGGAAGGGCTCCTTCC
TGAGGGGAGGGAAACACATTCTCCAAAGAAATCCCCCCATAATGTTCTCC
CCGGAAAATTGGGTATTTAACCCCCCACCCCCTGTTAACCCATAAAAATA
AAAATAAATTTTTTCTAACTCCCCTGAATTCTTCTACAATAAATGAACAA
CTTGGTTCGGTGTGGCACCAACTCGCCCCTCCTTCTAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_n23.b1 MSMg01no461_n23.b1 CHROMAT_FILE:
MSMg01no461_n23.b1 PHD_FILE: MSMg01no461_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:38 2005
         (339 letters)



>mm_chr3_26577498_26578236
          Length = 739

 Score =  629 bits (325), Expect = 0.0
 Identities = 336/341 (98%), Gaps = 4/341 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaggagtggtcactggggcatttctggatacatatgccacgagtagtgatcacatcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ccaggagtggtcactggggcatttctggatacatatgccacgagtagtgatcacatcaaa 480

                                                                       
Query: 61  atgactggcatgtgacctggattgccccttggttttattttgatgcatggcttcattaat 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 479 atgactggcatgtgacctggattgcctcttggttttattttgatgcatggcttcattaat 420

                                                                       
Query: 121 gtagcccagtcttgtctcagacttttgatcctcatgtggctaaagtactgagatgacagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gtagcccagtcttgtctcagacttttgatcctcatgtggctaaagtactgagatgacagg 360

                                                                       
Query: 181 tttagacccccatacttatctctgagtgtttaaaaaatagttttaggatgtttatatatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tttagacccccatacttatctctgagtgtttaaaaaatagttttaggatgtttatatatc 300

                                                                       
Query: 241 taccaattttttatt--aaaaagtttgatatgagttatacctattgtaagtgattaaaag 298
           |||||||||||  ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 taccaattttt--ttaaaaaaagtttgatatgagttatacctattgtaagtgattaaaag 242

                                                    
Query: 299 gagaagaaattatggtcatctaggatagtgggttttcaacc 339
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gagaagaaattatggtcatctaggatagtgggttttcaacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)