BAC Information

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BAC

Clone NameMSMg01-461O15
Chromosome3 (Build37)
Map Location 150,119,690 - 150,120,207
singlet/doubletsinglet
Overlap geneLOC100040455
Upstream geneLOC100040620, LOC100040633
Downstream geneLOC100040463, LOC623554, Eltd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461O15.T7 (MSMg01no461_o15.b1)MSMg01-461O15.TJ (MSMg01no461_o15.g1)
ACCAG546924AG546925
length745738
length of high quality
(start - end)
241 (74 - 314)518 (70 - 587)
definitionCHROMAT_FILE: MSMg01no461_o15.b1 PHD_FILE: MSMg01no461_o15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:42 2005CHROMAT_FILE: MSMg01no461_o15.g1 PHD_FILE: MSMg01no461_o15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCCGCGGAAT
CAGAACTTTTTACATAGAAAGGAACAGAGTACCAGTGAGTACAGCTTTAC
AAGGTAAGTCTGGTCTTGAACTTTCTAAGGAAATTCAAGACAGTCTATCA
GAAGTAAAGTGGAAAATGGCTTTACAAGGTATGTTTGGCCTTGAATTTTT
TCTAGTGTTAGGAGCCCTTTTGTTCCTTTTCACATGTTATCAGGTGATTA
AGATAGGGCTAAAAATTCTGGATGAAATTCCAGGGCAATCTATCAGAAGT
AAAGCGGGGAGAGATTAATGTTCAAAGAGAAAATATGGTACACAAAATAA
GCATACAGGCCTTTCCACGGGTCTTGAACCCGAGGAAAAGTTTAGGTCAG
GTAAGAATACCTGGGGAGAGATTGGAAGGAAGGAGAAGGAAAAAGAAAAG
AAAAAAGATCAATCAGCGGAGGTCTCTAGGAGAAGGAGCCTATACTCATC
ACCTAGGTGAGCTCAAGGAGCCAGTTCTTAGCAGCTCTAAATCATATGAA
AAGGCTATTAGCGCCTGTAAGGCTCTCTCCCGAGCATGTGAAGCCACTGT
ACCTATAATGACTGATGTCGGCTCCTGTCTCCTACCAGGTCTTATCGTCT
TTCTCTATAGTTCCAGATTACGATTATTATGGTAACTCCCCTTTCTTTGT
TCTTGCCTTCTAACTGTCTTTTTCTATATCTTTTGCCCTTTAACT
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTATATGTCCAGTTATAGTGTGAATAGCTGAC
TATGTCTTTAATTGAATATCTAATTACATTATTTTGAATGTTTTTTACAT
GAAGATTAGTGTTCTTTATTTAATTTATAATAGATGCTATCACCATTAAT
TTATTGCAAGTGGAATTTATTACTGTCAAGGTAGTTGCTGAGAATGCTAT
CTTCTAAACTTGTCTTGATCTCCAGCCCTTTCATGAGATAGAATTGTTCA
TTTTTTAAAAAGGAAAGAACAGAGTTTGACGATCAGAAGCAACTTGGCCT
GAGGTGTTCAGTGAAGGCCAGATGGAATCAGTGTTTATCTCTCATCAAGC
AGGACAGAGTGATCATGTTTAAAATGAGCGATCATTGTGGCATGCTAACA
GAAGATATCACAATGTTTTATGCTTGATAATCAAGAATCTTTGGGGATCC
TCTTCCAAAGATCTTCAGACAAAACTCCACAATCTTTTCATGAGTGGTCT
TACCAGAAGACAGTTGTCTTGGAGAAAAACTGATTCTGAGGTTGTAGAAG
CACTCCAACTGAATGCATCTTGGAATTCACTGCCAGTGTTTCAAACCAGC
ATTAATAGATGTCCTTCCAAGTCTTGCTTCTGTCCTATGAACTCTCCTAC
CCTTTCAGCCCATGACAGCAATCTTTGCTTTGAGAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_o15.g1 MSMg01no461_o15.g1 CHROMAT_FILE:
MSMg01no461_o15.g1 PHD_FILE: MSMg01no461_o15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:42 2005
         (518 letters)



>mm_chr3_150119490_150120407
          Length = 918

 Score =  963 bits (498), Expect = 0.0
 Identities = 513/518 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatatgtccagttatagtgtgaatagctgactatgtctttaattgaatatctaattacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 718 tatatgtccagttatagtgtgaatagctgactatgtctttaattgaacatctaattacat 659

                                                                       
Query: 61  tattttgaatgttttttacatgaagattagtgttctttatttaatttataatagatgcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tattttgaatgttttttacatgaagattagtgttctttatttaatttataatagatgcta 599

                                                                       
Query: 121 tcaccattaatttattgcaagtggaatttattactgtcaaggtagttgctgagaatgcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tcaccattaatttattgcaagtggaatttattactgtcaaggtagttgctgagaatgcta 539

                                                                       
Query: 181 tcttctaaacttgtcttgatctccagccctttcatgagatagaattgttcattttttaaa 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 538 tcttctaaacttgtcttgatctccagccctttcatgggatagaattgttcattttttaaa 479

                                                                       
Query: 241 aaggaaagaacagagtttgacgatcagaagcaacttggcctgaggtgttcagtgaaggcc 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aaggaaagaacagagtttgaagatcagaagcaacttggcctgaggtgttcagtgaaggcc 419

                                                                       
Query: 301 agatggaatcagtgtttatctctcatcaagcaggacagagtgatcatgtttaaaatgagc 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 418 agatggaatcagtgtttatctctcatcaagcagaacagagtgatcatgtttaaaatgagc 359

                                                                       
Query: 361 gatcattgtggcatgctaacagaagatatcacaatgttttatgcttgataatcaagaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gatcattgtggcatgctaacagaagatatcacaatgttttatgcttgataatcaagaatc 299

                                                                       
Query: 421 tttggggatcctcttccaaagatcttcagacaaaactccacaatcttttcatgagtggtc 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tttggggatcctcttcccaagatcttcagacaaaactccacaatcttttcatgagtggtc 239

                                                 
Query: 481 ttaccagaagacagttgtcttggagaaaaactgattct 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ttaccagaagacagttgtcttggagaaaaactgattct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)