Query= MSMg01no461_o19.b1 MSMg01no461_o19.b1 CHROMAT_FILE:
MSMg01no461_o19.b1 PHD_FILE: MSMg01no461_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:43 2005
(268 letters)
>mm_chr3_73444607_73445274
Length = 668
Score = 453 bits (234), Expect = e-132
Identities = 257/268 (95%), Gaps = 6/268 (2%)
Strand = Plus / Plus
Query: 1 ttccaactcatataacaaattatgtaacatagtttgttcttttttcttcttgacagagaa 60
|||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 ttccaactcatagaagaaattatgtaaaatagtttgttcttttttcttcttgacagagaa 260
Query: 61 acaacttatggcttggacactgtgatgtgaaaaagcactacaataggtcacgtcatgatt 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 acaacttatggcttggacactgtgatgtgaaaaagcactacaataggtcatgtcatgatt 320
Query: 121 tttgttgttgttgttttgtgtttttattttttcgagacagggtttctctgtatagccctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgttgttgttgttttgtgtttttattttttcgagacagggtttctctgtatagccctg 380
Query: 181 gttgttctggaactcactttgtataccaggctggcctcaaactcagaaatcctcctgcct 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttgttctggaactcactttgtagaccaggctggcctcaaactcagaaatcctcctgcct 440
Query: 241 ctgcctctgcctcccaagtgctgggatt 268
||||||| |||||||||||||||
Sbjct: 441 ctgcctc------ccaagtgctgggatt 462
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space: 170681
Effective search space used: 170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no461_o19.g1 MSMg01no461_o19.g1 CHROMAT_FILE:
MSMg01no461_o19.g1 PHD_FILE: MSMg01no461_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:43 2005
(500 letters)
>mm_chr3_73632611_73633505
Length = 895
Score = 847 bits (438), Expect = 0.0
Identities = 483/500 (96%), Gaps = 5/500 (1%)
Strand = Plus / Minus
Query: 1 ccttgactatattattgaaaaaaatgttaactatttttaaatgtcataattataggaatt 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 695 ccttgactatattattgaaaaaaattttaactatttttaaatgtcataattataggaatt 636
Query: 61 tcatacaataaactgttatttgagaatattcatccatataaagagagttctttgctttag 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tcatacaatagactgttatttgagaatattcatccatataaagagagttctttgctttag 576
Query: 121 atactttcagggcttttaacatgtttatccctaggcctttgcaagtgagagtagcagaaa 180
|||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 575 atactttcggggattttaacatgtttgtccctaggcctttgcaagtgagagtagcagaaa 516
Query: 181 cattaaactagatcctatgtatacttgtccacagagtcctctttgaatagaataatttgc 240
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 515 gattaaactagatcctatgtatacttgtccacagaatcctctttgaatagaataatttgc 456
Query: 241 tctctaacagttagttcttatttagaacaggctgctatactgttcaggtgttagaggggg 300
|||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 455 tctctaac----agttcttatttagaacgggctgctatactattcaggtgttagaggggg 400
Query: 301 aatatttgtgtgctgcttgcatatgaggaaagagctgcagcatttccataattgatagca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aatatttgtgtgctgcttgcatatgaggaaagagctgcagcatttccataattgatagca 340
Query: 361 ggtacttgaactgcggttattgattatatgccttattctctcttttaccatactcacagg 420
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 339 ggtacttgacctgcggttattgattatatgccttattctctcctttaccatactcacagg 280
Query: 421 tcacaattctttgtttcattttgctatgcatattttgttacattgtttatttcatatcct 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 279 tcacaattctttgtttcattttgctatgcatattttgttacattgttt-tttcatatcct 221
Query: 481 acactgagagtccttttcat 500
||||||| ||||||||||||
Sbjct: 220 acactgaaagtccttttcat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 895
Length adjustment: 10
Effective length of query: 490
Effective length of database: 885
Effective search space: 433650
Effective search space used: 433650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
