Query= MSMg01no461_p19.b1 MSMg01no461_p19.b1 CHROMAT_FILE:
MSMg01no461_p19.b1 PHD_FILE: MSMg01no461_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:48 2005
(467 letters)
>mm_chr3_152096101_152096967
Length = 867
Score = 737 bits (381), Expect = 0.0
Identities = 418/441 (94%), Gaps = 17/441 (3%)
Strand = Plus / Minus
Query: 3 gaattctttactaatttctactaaaaaaggatctatgtgtaggcatcctttctactgacc 62
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaattctttactaatgtgtactaaaaaaggatctatgtgtaggcatcctttctactgacc 382
Query: 63 aattagaagggaaactcaacaaaaatgaaaggaaatactaagtcacagcattgccgaaag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattagaagggaaactcaacaaaaatgaaaggaaatactaagtcacagcattgccgaaag 322
Query: 123 aacacagatagaagggaaactactggaaggccagggtcatccaacatgaaaagttagccc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacacagatagaagggaaactactggaaggccagggtcatccaacatgaaaagttagccc 262
Query: 183 ctggtctcacgagtatcaccccaccacctctgcaagggataagtgtaaatcaacaatgt- 241
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 261 ctggtctcacgagtatcaccccaacacctctgcaagggataagcgtaaatcaacaatgtt 202
Query: 242 ----------------gcttaagatgagtgcaaagaatctttaaaatcatctatattatt 285
||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 aagactatattcatgtgcttaagatgagtgcaaagaatctttaaaatcatctacattatt 142
Query: 286 tgaaaatttcaaatttttggcaatagggctagatctggctcagtagttaagaacaccagc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 tgaaaatttcaaatttttggcaatagggctagatctggctcagtagttaagaacaccagc 82
Query: 346 tgcttcttttagggtttttagtactctggggtgcagggttctcggcacctacaaggtggc 405
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 tgcttcttctagggtttttagtactctggggtgcagggttctcggcacctacaaggtggc 22
Query: 406 tcacaaccatctgaaactcca 426
|||||||||||||||||||||
Sbjct: 21 tcacaaccatctgaaactcca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no461_p19.g1 MSMg01no461_p19.g1 CHROMAT_FILE:
MSMg01no461_p19.g1 PHD_FILE: MSMg01no461_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:48 2005
(464 letters)
>mm_chr3_151948981_151949843
Length = 863
Score = 851 bits (440), Expect = 0.0
Identities = 455/460 (98%), Gaps = 1/460 (0%)
Strand = Plus / Plus
Query: 5 cagagacttaaggtcagaagaaacacaaagttgtcgaattgaaaaacacactgaaagtat 64
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 205 cagagacttaaggtcagaagaaacacaaatttgtcgaattgaaagacacactgaaagtat 264
Query: 65 gctatggcaaagcaggtaaaacctggcaggaaataagaacgagatcctgccaggtcttgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctatggcaaagcaggtaaaacctggcaggaaataagaacgagatcctgccaggtcttgt 324
Query: 125 actctattctcaaggacggtggagatgctgaggagggagatcatcgcatcacatatttaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actctattctcaaggacggtggagatgctgaggagggagatcatcgcatcacatatttaa 384
Query: 185 agatggttttgatgtcagaacctgctgggaggggcaggagggtcaggtccatcaccagct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agatggttttgatgtcagaacctgctgggaggggcaggagggtcaggtccatcaccagct 444
Query: 245 ccatagagtccattgctgggttacaaagagtctttatctcaaaacaacaagatgctctta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccatagagtccattgctgggttacaaagagtctttatctcaaaacaacaagatgctctta 504
Query: 305 gcagaagtgcaggtgaacagaatagaggagaggaatgcaagggaggaaagcagtgggcag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcagaagtgcaggtgaacagaatagaggagaggaatgcaagggaggaaagcagtgggcag 564
Query: 365 cgagtcacgggctacagagatagagtagatttaggcaaaaggcatagagatgtaggccaa 424
||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 565 cgagtcacgggctacagggatggagtagatt-aggcaaaaggcatagagatgtaggccaa 623
Query: 425 gggaaagacaacaggaatagagaaagccgagaaaactaaa 464
||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gggaaagacaacaggaatagagaaagccgagaaaactaaa 663
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 863
Length adjustment: 10
Effective length of query: 454
Effective length of database: 853
Effective search space: 387262
Effective search space used: 387262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
