Query= MSMg01no462_k16.b1 MSMg01no462_k16.b1 CHROMAT_FILE:
MSMg01no462_k16.b1 PHD_FILE: MSMg01no462_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:45 2005
(506 letters)
>mm_chr3_29040911_29041821
Length = 911
Score = 899 bits (465), Expect = 0.0
Identities = 498/511 (97%), Gaps = 5/511 (0%)
Strand = Plus / Plus
Query: 1 caaagcatgcgacttctattaagtttgagttaactgataccactgtttatgacatgagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagcatgcgacttctattaagtttgagttaactgataccactgtttatgacatgagga 260
Query: 61 tgaacatactttagtattaaaagccatattttagagaaagaaaatagatcataaatatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaacatactttagtattaaaagccatattttagagaaagaaaatagatcataaatatca 320
Query: 121 gtcttcataaataacttctcaacatagtccaaggagatggggaaaagtcaggagagtagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcttcataaataacttctcaacatagtccaaggagatggggaaaagtcaggagagtagt 380
Query: 181 tggaggaagagtcagcagactgattaagatgtggcacagggatggttagctgggcttctc 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaggaagagtcagcagactgattcagatgtggcacagggatggttagctgggcttctc 440
Query: 241 tatgtgacatgtctctgtcttctgtttgggtaaatggggcttgaacaacatgcactgtag 300
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 tatgtgacatggctctgtcttctgtttgggcaaatggggcttgaacaacatgcactgtag 500
Query: 301 aaatttagctagtaaagcccttaagacagatattgatagtgatcaaaaagactgagttgg 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 aaatttagctagtaaagcccttaagacagatattgatagtgagcaaaaagactgagttgg 560
Query: 361 accggattaactagaaggaactgggcatagaataaatggacaatatttgtagactgtttg 420
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||
Sbjct: 561 accggattaactagaaggaactgggcatagaataaatggtcaacatttgtagactgtgtg 620
Query: 421 gtcagggtaagatgcacaaa-ctcttggctttgaggtagctaaataagtaaggcaactaa 479
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 gtcagggtaagatgcacaaagctcttggctttgacgtagctaaataagtaaggcaactaa 680
Query: 480 atac----agtttcctttttattgtgatcag 506
|||| |||||||||||||||||||||||
Sbjct: 681 atacttacagtttcctttttattgtgatcag 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 911
Length adjustment: 10
Effective length of query: 496
Effective length of database: 901
Effective search space: 446896
Effective search space used: 446896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no462_k16.g1 MSMg01no462_k16.g1 CHROMAT_FILE:
MSMg01no462_k16.g1 PHD_FILE: MSMg01no462_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:45 2005
(461 letters)
>mm_chr3_29213175_29214035
Length = 861
Score = 505 bits (261), Expect = e-147
Identities = 276/281 (98%)
Strand = Plus / Minus
Query: 180 aaaaaaaatgtggcctaaaaatgttggcattgaagaagagaatagaaaagacgtgtaagt 239
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 542 aaaaaaaatgtggcctagaaatgttggcattgaataagagaatagaaaagacgtgtaagt 483
Query: 240 gacaaatgcctgataagtactcatatcaataataatatcaattgaattcaagaagaggaa 299
||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct: 482 gacaaatgcctgataagtactcatatcaatagtagtgtcaattgaattcaagaagaggaa 423
Query: 300 tgacaagacaatataaaacctactaaaaatgtatgtacttgacaaatattaaataatata 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgacaagacaatataaaacctactaaaaatgtatgtacttgacaaatattaaataatata 363
Query: 360 tattacatatgtataaagtaaatgtagaggtacagaaagtgtttaacatattcttgttat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tattacatatgtataaagtaaatgtagaggtacagaaagtgtttaacatattcttgttat 303
Query: 420 tttaaggctatcactgaaaataatagttcaggtagatagaa 460
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tttaaggctatcactgaaaataatagttcaggtagatagaa 262
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
