Query= MSMg01no463_l14.b1 MSMg01no463_l14.b1 CHROMAT_FILE:
MSMg01no463_l14.b1 PHD_FILE: MSMg01no463_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:15 2005
(590 letters)
>mm_chr3_17071116_17072105
Length = 990
Score = 1056 bits (546), Expect = 0.0
Identities = 576/586 (98%)
Strand = Plus / Minus
Query: 1 ttctcacaattctttgggggatcaaaattccatttcaatatgtcagaattcatcatgatt 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 786 ttctcacaattctttgggggatcaaaattccatttcaagatgtcagaattcatcatgatt 727
Query: 61 ctgtgttgcatcagaaaatggtgatgacatataaaagataaagggtgttctgttaagtct 120
||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 726 ctgggttgcatcagaaaatggtgatgacatataaaagataaagggtgtcctcttaagtct 667
Query: 121 ccttcctctaacagagccagcggtcagatcatggggctctgatgtaatagctcttaccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ccttcctctaacagagccagcggtcagatcatggggctctgatgtaatagctcttaccct 607
Query: 181 ttaagagccttaactataaaaaccatcaacattttactttgaaaagcaagaatttgcatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttaagagccttaactataaaaaccatcaacattttactttgaaaagcaagaatttgcatc 547
Query: 241 taggagtatatattctttacagatttcatgttaaaatatttctgacctaagatattttag 300
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 taggagtatatgttcaagacagatttcatgttaaaatatttctgacctaagatattttag 487
Query: 301 ggaagtgtatttaaaagatatagaattattttggctatagaaatttggtctgttgaatta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ggaagtgtatttaaaagatatagaattattttggctatagaaatttggtctgttgaatta 427
Query: 361 ttggcaccgagtgaaatttgaatagaataaaaacagggccacagttatagaacttctaaa 420
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 426 ttggcaccgagtgaaatttgaatagaataaaaatagggccacagttgtagaacttctaaa 367
Query: 421 atacaatggatcatttcatacattaaattgtcattgaaacagattgtcttctgggcattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atacaatggatcatttcatacattaaattgtcattgaaacagattgtcttctgggcattt 307
Query: 481 tctcagtagccttaccctattttctttttcttttccatattgttcttgataattttctca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tctcagtagccttaccctattttctttttcttttccatattgttcttgataattttctca 247
Query: 541 ctaataaaagcatcctaacattaaaatggaaatagatataaatttg 586
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ctaataaaagcatcctaacattaaaatggaaatagatataaatttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no463_l14.g1 MSMg01no463_l14.g1 CHROMAT_FILE:
MSMg01no463_l14.g1 PHD_FILE: MSMg01no463_l14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:15 2005
(580 letters)
>mm_chr3_16913752_16914731
Length = 980
Score = 1060 bits (548), Expect = 0.0
Identities = 571/584 (97%), Gaps = 10/584 (1%)
Strand = Plus / Plus
Query: 1 ctaaatttctcagttcttcagaaatttcatgaagtattatctgttttgattatgtcagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaatttctcagttcttcagaaatttcatgaagtattatctgttttgattatgtcagaa 260
Query: 61 gtcaggatttttttcccatattgctgcagtttgaaaccttctgacaattattcagacata 120
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 gtcaggaattttttcccatattgctgcagtttgaaaccttctgacaattagtcagacata 320
Query: 121 aattacttacaaacatagaaaattctttgattaacaggccatggaattgcaggtattaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattacttacaaacatagaaaattctttgattaacaggccatggaattgcaggtattaaa 380
Query: 181 atcacccccgagagggagcccatatcgttcattagacatctagtttgaattaaaaagaaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 atcacccccgagagggagcccatatcgttcattagacatctagtttgaattacaaagaaa 440
Query: 241 aaataatta-----ttttttatatgtttatatgtagtgtgtgttccctggagttaattct 295
||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaataattaaaaagt-----atatgtttatatgtagtgtgtgttccctggagttaattct 495
Query: 296 aaaagccacgtatatctaataaaaatgaaattatgttagctgcatattttacctaaggaa 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaaagccacgtatatctaataaaaatgaaattatgttagctgcatattttacctaaggaa 555
Query: 356 tatgaggaaatggataaaggcaggtgctgcttaatgtttcattcaaggaagctttcttgt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tatgaggaaatggataaaggcaggtgctgcttaatgtttcattcaaggaagctttcttgt 615
Query: 416 tgtcccaccctctcagcatggattgcagtgctctgcatcaactgcagaaatccgcataac 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tgtcccaccctctcagcatggattgcagtgctctgcatcaactgcagaaatccgcataac 675
Query: 476 tgaaaaaagaccataactaacttacaaaagagtgatttggggttgctatgagtagctgca 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tgaaaaaagaccataactaacttacaaaagagtgatttggggttgctatgagtagctgca 735
Query: 536 ggtttctgcattattttagccatgtccacagagattctgcagag 579
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ggtttctgcattattttagccatgtccacagagattctgcagag 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
