Query= MSMg01no464_b05.b1 MSMg01no464_b05.b1 CHROMAT_FILE:
MSMg01no464_b05.b1 PHD_FILE: MSMg01no464_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:43 2005
(510 letters)
>mm_chr3_31299664_31300573
Length = 910
Score = 843 bits (436), Expect = 0.0
Identities = 488/506 (96%), Gaps = 2/506 (0%)
Strand = Plus / Minus
Query: 5 gaattctacttcttttcctgcctcaaggttcctaccttgagttcctggcctgactaccct 64
|||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 734 gaattctacttcccttcctgcctccaggttcctaccttgagttcctgccctgactaccct 675
Query: 65 cagtgatgaacagtaacctgaaatctgtaagctgaaataaactctctcctccccaaattg 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 674 cagtgatggacagtaacctgaaatctgtaagctgaaataaactctctcctccccaaactg 615
Query: 125 gttttggttggggtatcagcactaataaacatttttttttctataagttgcctttgtcgt 184
|||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 614 gttttggtcggggtgtcagcactaataaaca--tttttttctataagttgcctttgtcgt 557
Query: 185 ggtgctttattacagcaatagaaaactacctgggtggtgatggctcatgcctttacacct 244
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ggtgctttatcacagcaatagaaaactacctgggtggtgatggctcatgcctttacacct 497
Query: 245 ttgatcttagtgttgtgtgtagttttaaatgtttgctactgcctttgcctgagagctgcc 304
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 496 ttgatcttagtgttgtgtgtagttttaaatgcatgctactgcctttgcctgagagctgcc 437
Query: 305 atcatgctctggccccctccgacttcctttgtcctaccctgcttagctccaggatatatt 364
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 436 atcatgctctggccccctccggcttcctttgtcctaccctgcttagctccaggatctatt 377
Query: 365 acaatcagcccgacctgagacccttgaatctgaggataaagaacacacactcagcttgtc 424
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 376 acaatcagcccgacctgagacccttgaatctgaggatgaaggacacacactcagcttgtc 317
Query: 425 actttacagcttgcctttcatagcacaattgttgggtgcagatacctcctaactggaata 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 316 actttacagcttgcctttcatagcacaattgttgggtgcagatacctcctaactggaaaa 257
Query: 485 gcatgccttaccaatttatatctcca 510
||||||||||||||||||||||||||
Sbjct: 256 gcatgccttaccaatttatatctcca 231
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no464_b05.g1 MSMg01no464_b05.g1 CHROMAT_FILE:
MSMg01no464_b05.g1 PHD_FILE: MSMg01no464_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:43 2005
(474 letters)
>mm_chr3_31164494_31165367
Length = 874
Score = 893 bits (462), Expect = 0.0
Identities = 471/474 (99%)
Strand = Plus / Plus
Query: 1 cataaatatgtaaacactgacttccttcaatggctagctttaactaaaagcctatagaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataaatatgtaaacactgacttccttcaatggctagctttaactaaaagcctatagaca 260
Query: 61 cccagcagaacaaaacaaaactcagctaacctacctctgctcgaagtaactaattctcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccagcagaacaaaacaaaactcagctaacctacctctgctcgaagtaactaattctcaa 320
Query: 121 agggtgagggtggggctgggcgttgggtacttctgaggacagctaatctttgtgtcgtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggtgagggtggggctgggcgttgggtacttctgaggacagctaatctttgtgtcgtgg 380
Query: 181 gacaatatttctacttatgggtttcccattctgccctgttcatcagtactctagggagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacaatatttctacttatgggtttcccattctgccctgttcatcagtactctagggagga 440
Query: 241 agatgttattttaatgtttcaggagaaaccctggcatcttttaggagaagcgagaagctt 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatgttatcttaatgtttcaggagaaaccctggcatcttttaggagaagcgagaagctt 500
Query: 301 ggttagagatctggccttttggcagtgaggggctgcagtctccttagaagcctgacagtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggttagagatctggccttttggcagtgaggggctgcagtctccttagaagcctgacagtc 560
Query: 361 ttataccactctccctccccacccctgccttccctcctgccccagggttcagacctctgc 420
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgataccactctccctctccacccctgccttccctcctgccccagggttcagacctctgc 620
Query: 421 tgggtcacacatccctgccacagcctgagcctgatgtcaccttcccctcccagt 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgggtcacacatccctgccacagcctgagcctgatgtcaccttcccctcccagt 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
