Query= MSMg01no464_j21.b1 MSMg01no464_j21.b1 CHROMAT_FILE:
MSMg01no464_j21.b1 PHD_FILE: MSMg01no464_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:27 2005
(508 letters)
>mm_chr3_80394492_80395399
Length = 908
Score = 899 bits (465), Expect = 0.0
Identities = 495/505 (98%), Gaps = 1/505 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaaatgattgacatgtagcatgctcaactctaatgcaaaccgagaatggaaaac 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaatgattgaaatgtagcatgctcaactctaatgcaaaccgagaatggaaaac 264
Query: 65 tatgcaagtagaaatctatattgtgagacctggggaaaaaagagaattttatcttaaaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatgcaagtagaaatctatattgtgagacctggggaaaaaagagaattttatcttaaaaa 324
Query: 125 caaacaaagcctcatgaagttacagattcagaattttagcaatttaaaaaaataatattt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaacaaagcctcatgaagttacagattcagaattttagcaatttaaaaaaataatattt 384
Query: 185 tcatgcagaagttttgcatgttgctttgacacccccccagtctcctggc-cctactttat 243
||||||||||||||| || |||||||||||||||||||| |||||||| ||||||||||
Sbjct: 385 tcatgcagaagtttttcaagttgctttgacacccccccattctcctgggtcctactttat 444
Query: 244 ggtttatgattcttgaggataactacagaatatcctgtcaattctacattctgagtgaac 303
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 ggtttatgattcttgaggataactacagaatatcctgtcaattctacattccgagtgaac 504
Query: 304 agggaactagctggaatcacctgggtgctgctgcattcaataacttgacccagaaaaggg 363
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 505 aggaaactagctggaatcacctgggtgctgctgcattcaatggcttgacccagaaaaggg 564
Query: 364 attccttcaatgttctggtggtgttcctttccctggggtgagaataaaactggcaccatg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attccttcaatgttctggtggtgttcctttccctggggtgagaataaaactggcaccatg 624
Query: 424 ctgttttcctggctctgcaccttggtacaaggagagagtatgcatttgcagagaagcttt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgttttcctggctctgcaccttggtacaaggagagagtatgcatttgcagagaagcttt 684
Query: 484 aaatataaccagccaactggaaatg 508
|||||||||||||||||||||||||
Sbjct: 685 aaatataaccagccaactggaaatg 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no464_j21.g1 MSMg01no464_j21.g1 CHROMAT_FILE:
MSMg01no464_j21.g1 PHD_FILE: MSMg01no464_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:27 2005
(427 letters)
>mm_chr3_80510112_80510938
Length = 827
Score = 810 bits (419), Expect = 0.0
Identities = 425/427 (99%)
Strand = Plus / Minus
Query: 1 actataaagatgtcagcagctgccgaccatttgtccaagcaaatttaagatgcttagaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 actataaagatgtcagcagctgccgaccatttgtccaagcaaatttaagatgcttagaag 568
Query: 61 gcaaatttttaccgtcggtgtaagcctgtgaaatacctgaacaatgttccttgaatgttg 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gcaaatttttaccgtcggcgtaagcctgtgaaatacctgaacaatgttccttgaatgttg 508
Query: 121 atcatgtgtttccctggtgaaatcatatacaccatggagaggctataaaatgcaaaaggt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 507 atcatgtgtttccctggtgaaatcatatacaccatggagaggctataaaatgcagaaggt 448
Query: 181 tcctatcattccatgcctgcttggaggggtaccgtgtttttgctgcatattctcatttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcctatcattccatgcctgcttggaggggtaccgtgtttttgctgcatattctcatttta 388
Query: 241 cagttatctgtgtgttcatccacagacctgtatatgggaaaatgggcgaggttagatttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cagttatctgtgtgttcatccacagacctgtatatgggaaaatgggcgaggttagatttt 328
Query: 301 tcctacagggtcaacaacttgttagacaacacttcatttgcacatacctcatctctttat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tcctacagggtcaacaacttgttagacaacacttcatttgcacatacctcatctctttat 268
Query: 361 ttctctaacatcaattcatggaaatggtgtgtttgtgaggttattaaaagttttaaatgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttctctaacatcaattcatggaaatggtgtgtttgtgaggttattaaaagttttaaatgt 208
Query: 421 taggctc 427
|||||||
Sbjct: 207 taggctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space: 341924
Effective search space used: 341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
