Query= MSMg01no465_i18.b1 MSMg01no465_i18.b1 CHROMAT_FILE:
MSMg01no465_i18.b1 PHD_FILE: MSMg01no465_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:41 2005
(249 letters)
>mm_chr3_142797975_142798623
Length = 649
Score = 429 bits (222), Expect = e-125
Identities = 248/272 (91%), Gaps = 24/272 (8%)
Strand = Plus / Minus
Query: 1 caccatgtgcatctgcatataggttcacatacatgcaaaaacat---------------- 44
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 caccatgtgcatctgcatataggttcacatacatgcaaaaacatacacacacacacacac 494
Query: 45 --------acacacacacacacacacacacacacacaaacagacaatcttaaaacaagaa 96
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 acacacacacacacacacacacacacacacacacacaaacagacaatcttaaaacaagaa 434
Query: 97 aaactacaagtacctaaagatacatactttacaaatagagaccacactgcataatttcag 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aaactacaagtacctaaagatacatactttacaaatagagaccacactgcataatttcag 374
Query: 157 aatgtaagcaaagttagtcatatcattgcaataagaacttaaaacactgtcaatgtttct 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aatgtaagcaaagttagtcatatcattgcaataagaacttaaaacactgtcaatgtttct 314
Query: 217 attaaatcaactggtatttgctataatgcatg 248
||||||||||||||||||||||||||||||||
Sbjct: 313 attaaatcaactggtatttgctataatgcatg 282
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no465_i18.g1 MSMg01no465_i18.g1 CHROMAT_FILE:
MSMg01no465_i18.g1 PHD_FILE: MSMg01no465_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:41 2005
(425 letters)
>mm_chr3_142604698_142605522
Length = 825
Score = 770 bits (398), Expect = 0.0
Identities = 419/426 (98%), Gaps = 2/426 (0%)
Strand = Plus / Plus
Query: 1 attcagcagcgtcacaggataaagttcactgcattggtctccaggggtattagagagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 attcagcagcgtcacaggataaagttcactgcattggtctccagggg-attagagagaaa 259
Query: 61 acaatttcagcttctaaaagtgcttctcagggcttccagtgaaggcttgtatgggacatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acaatttcagcttctaaaagtgcttctcagggcttccagtgaaggcttgtatgggacatg 319
Query: 121 aaaggactccaggaattaaacagctttcagcttggttctaaattcaggaattaatataat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaaggactccaggaattaaacagctttcagcttggttctaaattcaggaattaatataat 379
Query: 181 taatcaaagctgcagctcacagttcctttgaaaacaatatgcagagtacgtggccccttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 380 taatcaaagctgcagctcacagttcctttgaaaacaatatgcagagtacgtggcctcttc 439
Query: 241 acgaagtccactctatcttattagtttgaaagtcagtcatatccaattagcccgctgatt 300
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acgaagtccacacaatcttattagtttgaaagtcagtcatatccaattagcccgctgatt 499
Query: 301 tttt-aaaaaaggagtatttttattaattctctgagaattccatgttatgtattttgctc 359
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 500 tttttaaaaaaggagtatttttattaattctctgagaactccatgttatgtattttgctc 559
Query: 360 acactctctcaccctgtaactcctccaagacccacacccacttttacccatgtaactgca 419
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 560 acactctctcaccctgtaactcctccaagacccacacccacttctacccatgtaactgca 619
Query: 420 tgttct 425
||||||
Sbjct: 620 tgttct 625
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space: 339456
Effective search space used: 339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
