BAC Information

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BAC

Clone NameMSMg01-465P17
Chromosome3 (Build37)
Map Location 25,026,351 - 25,026,671
singlet/doubletsinglet
Overlap genenone
Upstream geneEG635702, EG665189
Downstream geneLOC100039592, Nlgn1, LOC621017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465P17.T7 (MSMg01no465_p17.b1)MSMg01-465P17.TJ (MSMg01no465_p17.g1)
ACCAG550034AG550035
length745742
length of high quality
(start - end)
580 (63 - 642)324 (313 - 636)
definitionCHROMAT_FILE: MSMg01no465_p17.b1 PHD_FILE: MSMg01no465_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:17 2005CHROMAT_FILE: MSMg01no465_p17.g1 PHD_FILE: MSMg01no465_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGT
CCCTACCTGAGCATGATAGATACAATCCACAGCAAACCAATAACCAACAC
CAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTA
GACAAGGCTGTCCACTCTCGCCCTACCTATTCAACATTGTACTTGAAGTC
CTAGCCAGAGCAATTAGACAACAAAAGGAGATCAAGGGGATACAAATTGG
AAAGAAAGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATA
TAAGTGTTCCTAAAAATTCCACCAGAGAACTCCTAAGCCTGATAAACAGC
TTCAGTGAAGTAGCCGGATATAAAATTAACTCAAACAAGTCAATGGCCTT
TCTGTACACAAAGCATAAATAGGCTGAGTAAGAAATTAGGGAAACAACAC
CCTTCTCAATAGTCACAAATAATATAAAATACCTTGGCATGACTTTAACT
AAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAGTGTCTGAAGAAAGA
AATTAAAGATCTCAGAAGATGGAAACATCTGCCATGCTCATGGATTGGCA
GGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTC
AATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACAAATTAGAAAG
GGCAATCGGCAGATTCATCTGGAATAACAAGAAACCTAGGATAGC
GGAGGCCTGGNGGNCGCCTGTTCGAAAATTGAGGTGAACTATAGAAGTAC
AGAGAAAATCACCTGGATGAATGCTGTGCCCCTATTCCTTTGCTCTGACC
CTGCAAACAACCTGAGTTCTCTTATTGCACGATAGTTGGTTTTCTGTAGC
ATTCTTCCAAAGAAGTTGACTTACTTTAAGTAAGTATGTACTAGAGTGTA
AACAACTCCTGCTCCTTTGAAATTCTGTACATTCCTATGGCCGACGTAAA
GCCCAGAGCTATGTGTCAGCTTACTACTAGCTTATAAAAACATGTCAGAG
TCTTCATCATTAAAGTATATGCATTACTGAGTTGACTCTTGGGGAAAATA
ACACTATTAGCACCTCTGTCTTAGAATCGATAAATCAATTTTAAGAACAA
AGAAAACATAAATTTTGCCTGATACTCCCCTATCTTAAATCTACAATATA
AATTGGCTTACCTTTGCAGTTTCATGGTTTCCGAGTACTTATTCCCAAGG
GTTCATTTGCCTTTCCCAATTTTCATTCAAGACTATGCTGGGACAGCCAG
GATCCCTAACTCAGGATGCATATACTCTGACACCTCAATGACAAGCGCCT
TAATGCTTTAAATTGTTTCTTCAGAATCTTGAGNTCAGATATTTTTATTT
TTTATTTTTTTCATAATCAGCAATGTTATTGCGAAAGGNCAAACCTACTC
CATGTTGGAACCAGCCTCCATAATAAAAGAAAAGGGCATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_p17.g1 MSMg01no465_p17.g1 CHROMAT_FILE:
MSMg01no465_p17.g1 PHD_FILE: MSMg01no465_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:17 2005
         (324 letters)



>mm_chr3_25026151_25026874
          Length = 724

 Score =  545 bits (282), Expect = e-159
 Identities = 312/322 (96%), Gaps = 2/322 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtatatgcattactgagttgactcttggggaaaataacactattagcacctctgtctt 60
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 201 aagtatatgcattactgagttgactcttggggaaaataagtctattagcacctctgtctt 260

                                                                       
Query: 61  agaatcgataaatcaattttaagaacaaagaaaacataaattttgcctgatactc-ccct 119
           |||||| |||||||||||||||||||||||||||||||||||||||| ||| ||  ||||
Sbjct: 261 agaatcaataaatcaattttaagaacaaagaaaacataaattttgccagat-cttgccct 319

                                                                       
Query: 120 atcttaaatctacaatataaattggcttacctttgcagtttcatggtttccgagtactta 179
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 320 atcttaaatctacaatataaattgacttacctttgcagtttcatggtttccgagtactta 379

                                                                       
Query: 180 ttcccaagggttcatttgcctttcccaattttcattcaagactatgctgggacagccagg 239
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 380 ttcccaagggttcatttgcctttccccattttcattcaagactatgctgggacagccagg 439

                                                                       
Query: 240 atccctaactcaggatgcatatactctgacacctcaatgacaagcgccttaatgctttaa 299
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 440 atccctaactcaggatgcatatactctgacacctcaatgacaagcaccttaatgctttaa 499

                                 
Query: 300 attgtttcttcagaatcttgag 321
           ||||||||||||||||||||||
Sbjct: 500 attgtttcttcagaatcttgag 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)