Query= MSMg01no466_b11.b1 MSMg01no466_b11.b1 CHROMAT_FILE:
MSMg01no466_b11.b1 PHD_FILE: MSMg01no466_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:27 2005
(541 letters)
>mm_chr3_124906848_124907788
Length = 941
Score = 878 bits (454), Expect = 0.0
Identities = 520/548 (94%), Gaps = 12/548 (2%)
Strand = Plus / Minus
Query: 5 gaattctgtattcccggttggtctacagaggagtccagaacaggtcttgttactatacag 64
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 gaattctgtaagccaggttggtctacagaggagtccagaacaggtcttgttactatacag 699
Query: 65 aaaaaccatgtcttaacaaaacacaagcaagcaagcaaacaaatatgtatttgcattatt 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 698 aaaaaccatgtcttaacaaaacacaagcaagcaagcaaacaaatatgtatttgcatcatt 639
Query: 125 ttatatttgatgggagatagagtttgagggctgagaagactggatggagggaaaactgtg 184
|||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 638 ttatatttgaagggagatagagtttgagggctgggaagactggatggagggaaagctgtg 579
Query: 185 gttgggatacattatataaaagaagaatctattttcaaaaagtaaaaccttcaaacaaaa 244
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 578 gttgggatacattatataaaagaagaatctatttttaaaaaataaaaccttcaaacaaaa 519
Query: 245 attaaattaaaaaagtattaccatttcctaatggaatttacaaattgagtttttacaatg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 attaaattaaaaaagtattaccatttcctaatggaatttacaaattgagtttttacaatg 459
Query: 305 attgtacatggggtaaacttt----------atgtgttgccagaaaatctcttgtcttac 354
||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 458 attgtacatagggtaaactttgtgtgtgtgtatgtgttgccagaaaatctcttgtcttac 399
Query: 355 atgttttccaagccttt-acttctttaggcaatttaaaaatattattttaaatttttaat 413
|||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 398 atgttttccaagccttgga-ttctttaggcaatataaaaatattattttaaatttttaat 340
Query: 414 ttgggattcttacaactacttagaatttgaaattcaaaagcattaattacaaaagaagct 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ttgggattcttacaactacttagaatttgaaattcaaaagcattaattacaaaagaagct 280
Query: 474 ccgtaatttccactacacctacaaattgagttagcacacccaacatactgaggatatcta 533
||||||||| |||| |||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 279 ccgtaattttcactgcacctaaaaattgagttagcacacccaacatagtgaggatatcta 220
Query: 534 ttttgctg 541
||||||||
Sbjct: 219 ttttgctg 212
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no466_b11.g1 MSMg01no466_b11.g1 CHROMAT_FILE:
MSMg01no466_b11.g1 PHD_FILE: MSMg01no466_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:27 2005
(156 letters)
>mm_chr3_124872516_124873071
Length = 556
Score = 281 bits (145), Expect = 2e-80
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 1 aatgtagtacatgacttaaactttataaaaaaatttagactggctaataccctaggtgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgtagtacatgacttaaactttataaaaaaatttagactggctaataccctaggtgct 260
Query: 61 tttttggtatgtgctacagggcagagaagatgtaatctacatctatttagtttactggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttggtatgtgctacagggcagagaagatgtaatctacatctatttagtttactggtg 320
Query: 121 tgtgtgtgtgtgtgtgtgtgtgtgt 145
|||||||||||||||||||||||||
Sbjct: 321 tgtgtgtgtgtgtgtgtgtgtgtgt 345
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 556
Length adjustment: 8
Effective length of query: 148
Effective length of database: 548
Effective search space: 81104
Effective search space used: 81104
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
